Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03484 ATGGAAATGGAATTGGAAGCTGAAGCTGAAGCTGATTTTATGACGAATGACATGCTCACACTCCCACACGATCCCTTTGATCCCAACCACATCCATGATGATGATAATTTGGCTATTGAAGGCGAAAGATGTGGAATATGCATGGATATCGTCATTGATAGGGGAGTTCTCGATTGCTGTCAGCATTGGTTCTGTTTTGTATGCATTGATAACTGGGCTACAATCACTAATCTCTGCCCACTTTGCCAGAACGAGTTTCAGTTGATCACTTGTGTACCAGTTTATGATACCATTGGAGGCAATAAAGTTGAAGATGACTCATTCTCCAGAGATGACGAATGGTCCATTGAAGGGAAGAACAATACATTATCGTTTCCCTCCTACTACATTGATGAAAATGCAGTTACTTGTTTGGATGGTGATGGCTGCAAAGTTCGAAGTGGATTGGAAACTATTGAAGGAGATTCTGATCTTGATACATCAATTGCATGTGATTCATGTGATACATGGTACCATGCCTTCTGTGTGGGATTTGATACAGAAGGTACATCTGAAAGTACATGGTTATGTCCAAGATGCATGGTCGGTGAAGTTTCTAAAGGAAGAGACACTGATTCAATGGAGAGCACGATGGTAGAATGTAACCCAGAGCATATTAACAATCAATGTCAGGCTGAGGATTCCTTTTCAAGAAAAGTTTGTGTGTCTGTTGCTGATGCGGGAGAGACAGCTGTTGTTGTTTCAATGGTTGATGGACATAAATGGGTTCCATCAACAAGCGAGAAAAGCCTATTGCCTCTTGAACTTGGCAGGGAACAATTGACTGCATCATGTATATTAGATTCTGACACAACTAATCAGCAGAAAGCAATGGAGAAGAAGATTATGTCACCAATTGTGAAGGAACAAGAGCTGGAGTTGTGCTTATCACACAATGTATCTGGTAGCCTAAGTTCTAAATCCTTGGAGCATAATGATCGAAAGGAAAGTGCTCATGGAGCAAGGAGTGGACCAAGTAACCTTGATGAAACCAAGTTAGCTGATGAGTCCCATGTCAAAACTAGTCCTTCTAGAAATGAATCTGATATGGGTCTTCATCTTGGTTTATCAGTGGGCTCTTTCCTATCAGTTGATAATGTGGACAAGGATGGAATAAAAGATCACACAACTGGTGTCAAGCACCTGAGTTCAGATGAATGTTCTATGGAAGGAGATGTAATTGAAAATGATGTTAAGAAGGATAATAATAGTGTAACTGCTGGGAAGAGAAAGCATGTTGATCACAGCAATGATGGAGGTCATTTGAAAGTTGATGGGGATGTGAAGCCTGAACTTCCAATTGAAGTGTCTCAAAAGAAAATTAGAGCTGCTGGTGGTCAAATGACTAGTATTAATAACTCAGCTGATGCCCAGCTTTCAGACAATGGTCAAAAGAGCTCTGCTTTGAACCATTCTGCATCCAAGGAGGTTGTCAGACCAACTATAATGAATATAGTTAAAGGTACAAACCGTAGGCTTTCCAAGGGACCTACTGGCACTAATTCGTCTGACAATGTGACTAGAAAGGATGAAAATATGGCTGGATTGAGGGTAAAAAAGATCATGAAGAGAGTTGCTGATGATGGAGAATCATCCTTGATAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTTGAGGGAAATATTGATACAAAGCTTCTTGCAGCATTCAGGGCTGCTATAGCTGGACCCAAAACTGAACCTGTAAATAAGTTAACCCCTTCAGCTTTAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAACGGTACGTGAGCATCTTACAAAGAAAATTTTTGGGACTTCGAATGGAAAAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGGTGCATGAGGGCTACAAGGCCTGAAAAAATTGAAACTTTAAAATCAGTTCTAGATCTACTAAGAAAAAATTCAGAGTCAACACAGGGTCCTGAATGTCAGGCCAAGGATACTATTCTTTCCAGGTTGTATCTAGCAGATACATCTGTTTTCCCACGGAAAGATGATGTCAAGCCCCTCTCTGTACTTAAAACTGATGCTAGCTCAGAGCAGACTAAACAAAATAACCCGTCAGGAACAGATATAAAAAATCTTTCATGCAATGCCAGAGTTTGTTCATCTGAAACAAAAGTAGATAAGAAGATTATACATGGTTCAGCTAGTGATAATTCGGCTTCTCGTAAGACATCAGTTTCTTCTTCAGCTGGTGCCAAAGTAAATGCAAAGGAATTAGGACTTAAATCAGATTCTACGAAGAGTGATAAAAAGAAATGGGCTTTAGAGTTTCTTGCTAAGAAAACAGCTGCTGATAGCAAAAGGACGGCAAATGGAAGTCAAGAAGACAATGCACTTTTTAAAGATAAATTTCCTTTGCTTGCCCAGCTACCGGCTGATATGAGACCAGTACTGGGACCTTCTTGTCACAATAAAATTCCAATATCAGTGAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTGTTGAGGAACACAAATCTGCCAGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATCAATATTGAAAAGGAGGTTGCTGACAGATCGAGCAGCAAGCTTGTGTATTTGAACCTCTGCTCACAAGAGCTCCGACATCGTGCAAATAACACAAAATCCGATGTAGCTGAAGATACAAATCCCCCGGAGTCACCTGCCAAGCTTCCTGATCAATTAGAACATAATGCTGATGATTGTTCAACCGACCCTGCTGTTGAAGCCTTGAAAAATGCTGGTCTATTGTCTGATTCACCACCTAGCAGTCCACATGATAACAGAGAAATAGGTAATGAAAATGATACTTCAGGGCCTGATAATATACTTGAATTGGATTCTCATCCTGAGCTGGACATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGACTACATTGGGGTTTCAAAGGTCTTAAACCCAAAACCAGAGGAAAGTGACTCGAAAGTGAAACTTGTTTTCTCCACCATGAACTCGAAGTCAGATACAGCTGTGGATGACACAGACTGTAAAGGGTCCCTTAACAGTGAAGTACTACGGGATGCCTCCGGCTCAACAACCTCTCACATCGAAACAGTCCCTAGGGACTCAGCAACTGATGCAGAGATTGGCGGGCCTTCTGCTTCGGTTTCTTCTGAGTTATGTGAGAGTGCTGTCGAGCCAGCTGATTCCGAATTTGAAGAATTATATGGCCCTGACAAAGAACCACTCATAAAAAAATTTCCAGATGCCGAACCAAGAACAACATGTGGAGAGGGCAAGAAAGAAACACCAAGTGAGGCCACTGACAAATCTAATGTATCTGAAACTGGTAAAAATTCCCCAGGGAAAGAAGAGAAATCTGATGATATGAGTGCGAAGCAGTCTGAGTGTGACTCGATAAACCATGTAACAAAGAAGGTAGAAGCCTATATCAAGGAGCATATGAGGCCACTGTGCAAGAGTGGTGTGATCACAGCAGAACAATACAGGTGGGCAGTCGCAAAAACAACAGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAGCTTGCAGAGCAGTATGCCGAAGCAGCCCAACAGAACAGAAAAAATTGA 3729 0.4116 MEMELEAEAEADFMTNDMLTLPHDPFDPNHIHDDDNLAIEGERCGICMDIVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGGNKVEDDSFSRDDEWSIEGKNNTLSFPSYYIDENAVTCLDGDGCKVRSGLETIEGDSDLDTSIACDSCDTWYHAFCVGFDTEGTSESTWLCPRCMVGEVSKGRDTDSMESTMVECNPEHINNQCQAEDSFSRKVCVSVADAGETAVVVSMVDGHKWVPSTSEKSLLPLELGREQLTASCILDSDTTNQQKAMEKKIMSPIVKEQELELCLSHNVSGSLSSKSLEHNDRKESAHGARSGPSNLDETKLADESHVKTSPSRNESDMGLHLGLSVGSFLSVDNVDKDGIKDHTTGVKHLSSDECSMEGDVIENDVKKDNNSVTAGKRKHVDHSNDGGHLKVDGDVKPELPIEVSQKKIRAAGGQMTSINNSADAQLSDNGQKSSALNHSASKEVVRPTIMNIVKGTNRRLSKGPTGTNSSDNVTRKDENMAGLRVKKIMKRVADDGESSLIVQNLRKEIREAVRNKSSINFEGNIDTKLLAAFRAAIAGPKTEPVNKLTPSALKAKKSMLQKGTVREHLTKKIFGTSNGKRKRAWDRDCEIEFWKYRCMRATRPEKIETLKSVLDLLRKNSESTQGPECQAKDTILSRLYLADTSVFPRKDDVKPLSVLKTDASSEQTKQNNPSGTDIKNLSCNARVCSSETKVDKKIIHGSASDNSASRKTSVSSSAGAKVNAKELGLKSDSTKSDKKKWALEFLAKKTAADSKRTANGSQEDNALFKDKFPLLAQLPADMRPVLGPSCHNKIPISVRQTQLYRLTERLLRNTNLPVIRRTADTELAVADAINIEKEVADRSSSKLVYLNLCSQELRHRANNTKSDVAEDTNPPESPAKLPDQLEHNADDCSTDPAVEALKNAGLLSDSPPSSPHDNREIGNENDTSGPDNILELDSHPELDIYGDFEYDLEDEDYIGVSKVLNPKPEESDSKVKLVFSTMNSKSDTAVDDTDCKGSLNSEVLRDASGSTTSHIETVPRDSATDAEIGGPSASVSSELCESAVEPADSEFEELYGPDKEPLIKKFPDAEPRTTCGEGKKETPSEATDKSNVSETGKNSPGKEEKSDDMSAKQSECDSINHVTKKVEAYIKEHMRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03484 1242 Coils Coil 548 568 - -
Arst3g03484 1242 ProSiteProfiles Zinc finger PHD-type profile. 76 196 IPR019787 -
Arst3g03484 1242 SMART ring_2 44 82 IPR001841 -
Arst3g03484 1242 MobiDBLite consensus disorder prediction 747 769 - -
Arst3g03484 1242 Pfam Zinc finger, C3HC4 type (RING finger) 44 82 IPR018957 GO:0046872
Arst3g03484 1242 MobiDBLite consensus disorder prediction 1049 1065 - -
Arst3g03484 1242 MobiDBLite consensus disorder prediction 342 356 - -
Arst3g03484 1242 PANTHER RING FINGER PROTEIN 41, 151 125 1232 - -
Arst3g03484 1242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 200 IPR013083 -
Arst3g03484 1242 SMART PHD_3 142 194 IPR001965 -
Arst3g03484 1242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 104 IPR013083 -
Arst3g03484 1242 MobiDBLite consensus disorder prediction 1048 1164 - -
Arst3g03484 1242 MobiDBLite consensus disorder prediction 411 440 - -
Arst3g03484 1242 ProSiteProfiles Zinc finger RING-type profile. 44 83 IPR001841 -
Arst3g03484 1242 SUPERFAMILY RING/U-box 35 89 - -
Arst3g03484 1242 SUPERFAMILY FYVE/PHD zinc finger 157 196 IPR011011 -
Arst3g03484 1242 MobiDBLite consensus disorder prediction 317 364 - -
Arst3g03484 1242 MobiDBLite consensus disorder prediction 748 766 - -
Arst3g03484 1242 MobiDBLite consensus disorder prediction 1098 1133 - -
Arst3g03484 1242 MobiDBLite consensus disorder prediction 951 983 - -
Arst3g03484 1242 MobiDBLite consensus disorder prediction 909 938 - -
Arst3g03484 1242 MobiDBLite consensus disorder prediction 456 484 - -
Arst3g03484 1242 Pfam PHD-finger 157 194 IPR019787 -
Arst3g03484 1242 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Arst3g03484 1242 MobiDBLite consensus disorder prediction 1144 1164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03484 Arst-Chr3 89667257 89674653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03484 44 95 C3H Transcription Factor Family AT3G58030 37.037 8.25e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst3g03484 PHD 1.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03484 - - adu:107479708 2462.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03484 3 89667257 89674653 Arst3g03484 3 89667257 89674653 ECH