Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03462 ATGACACCTGAAGAGGCTCTGAGTGAAATACTTCAGGCCTGTAAATTAAAATTAGGAGATCTTAAAGGAGCATTATTCGATGCTGAGTTTGCACTGCATGAAGAGGACAACAATGTCAAAGCATTTTTCCGGCAAGGACAGGCACATATGGCACTCCATGACATAGATGCTGCAGTTGAAAGCTTTAAAAATGCACTGGTCTTAGAGCCAAATGATGTCTCATCCTATGATCACATTCGAGGAAAGATCAAGATTGTGTAG 261 0.41 MTPEEALSEILQACKLKLGDLKGALFDAEFALHEEDNNVKAFFRQGQAHMALHDIDAAVESFKNALVLEPNDVSSYDHIRGKIKIV 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03462 86 Pfam Tetratricopeptide repeat 39 72 IPR001440 GO:0005515
Arst3g03462 86 Gene3D Tetratricopeptide repeat domain 3 85 IPR011990 GO:0005515
Arst3g03462 86 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
Arst3g03462 86 SUPERFAMILY TPR-like 13 77 IPR011990 GO:0005515
Arst3g03462 86 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 11 72 IPR039663 -
Arst3g03462 86 SMART tpr_5 39 72 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03462 Arst-Chr3 89177953 89180086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03462 13 72 Calmodulin-binding Proteins AT3G25230 46.667 4.48e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03462 K05864 - adu:107479886 172.94