Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03422 ATGGGTGTTTCACAAACAGAAATTCCAACGGCGTCTCCACATATGTATCCTCAGGAGCTTCAGTTAAAGCTGTACCAGGCCTTCATTTTCTCGATTCCAATACTGTTCTCCATAATTCTGGTTCTCCTATTCTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTCTCTCTTCTCCTCCCCTTCACTTACTTCCTACAATTCCCGATCCTCAAACTGCTCCCTACCCTTATCCTTCTTCGCCATACCGTTTAGATCTGACGCTGCAATTTCTGGACAAACTTCCAAGAATTTTATTTGATGAGGAACTGAGATCGAGGGACTCCTTATGCTGTGTATGTCTTGGAGAATTTGAGGTAAAAGAGGAGGTTCTACAGATTCCATATTGCAAGCATGTGTTTCACATAGAATGCATACACAACTGGCTTCGATCAAACTCCACATGCCCACTATGTAGATGCTCCATCATCCCCACCACCACCAAGTTCATTCTCAACAATCCTCCAGTCCTACCACCGCAGCACCAAGGTGGCTCGCCATCACACGTCATCGTATCTTTGCCTCCTCCTCGACCAGAACATGAACCCGCTGCTGCTTCCTCAATAAACACAACTTAA 615 0.4553 MGVSQTEIPTASPHMYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHLLPTIPDPQTAPYPYPSSPYRLDLTLQFLDKLPRILFDEELRSRDSLCCVCLGEFEVKEEVLQIPYCKHVFHIECIHNWLRSNSTCPLCRCSIIPTTTKFILNNPPVLPPQHQGGSPSHVIVSLPPPRPEHEPAAASSINTT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03422 204 SMART ring_2 110 151 IPR001841 -
Arst3g03422 204 CDD RING-H2_EL5-like 110 152 - -
Arst3g03422 204 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 79 157 - -
Arst3g03422 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 162 - -
Arst3g03422 204 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Arst3g03422 204 Pfam Ring finger domain 110 152 IPR001841 -
Arst3g03422 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 157 IPR013083 -
Arst3g03422 204 SUPERFAMILY RING/U-box 88 158 - -
Arst3g03422 204 MobiDBLite consensus disorder prediction 167 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03422 Arst-Chr3 84583285 84585363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03422 4 157 C3H Transcription Factor Family AT4G10150 39.752 6.19e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03422 K19039 - gmx:100806499 244.973