Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03358 ATGATGCTGGGTGAGTCACACCGCTCAAATCCAACCGTCCATGTGCCACCGTGGCCACCGCTCCTTGATGATCCAACGGCGGAGATGTATTCCCCCTTCTCTGGCACCAGACTGTCCGTACACTCCGACTCCAATGCCGCCGATTACTCTCCCTACTACATGCACGAAGCCATCTCCGCGCTGCAGCGCTACCTTCCCTCCAACGACGTCGTAGACGATGACTCCGATTCTGAGGCTGCGCGTGAGATCGACGCGCCGGTGGACGCATACTCGTGCGACCACTTCCGTATGTTCGAGTTCAAGGTGAGGAGGTGCGCGCGTGGCAGGTCCCATGACTGGACGGAGTGTCCGTACGCCCACCCTGGAGAGAAGGCTCGCCGCCGTGACCCGAGGAAGTTCCACTACTCCGGCGCCGCGTGCCCCGATTTCCGTAAGGGTGGTTGCAAGAAGGGTGACGCATGCGAGTACGCGCACGGCGTTTTCGAGTGCTGGCTCCATCCCGCGCGCTACCGCACGCAGCCATGCAAGGACGGAACCAGTTGCCGGAGGAGGGTCTGCTTCTTCGCTCACACGCCGGAGCAACTCAGGGTTCTGCCGCAGCACAGTCCCCGTAGCGTTGATTCCTATGACGGTTCCCCCCTGAGGCATGCAATGGAGTCATCGTGTGCGAAGACGCTGCCTTTTCTGTCTTCTCCGGGATCGGATTCTCCGCCGGCGGAAGATTCCCCGCCGATGTCGCCGGCGAATCGGTCGTTGGGGCGGTCCGTGAATGTGAGCGAGATGATGGCCTCTCTCCGGAATCTGCAGCTGAGTAAGGTTAAGTCTCTACCCTCCTCATGGAATGTTCCAATGGGGTCTCCCGGGTACGGATCTCCCCGGGGACCCATGATCCGATCCGGATTCTGTAGCCTTCCTTCTACACCAACGGAGGGGCCAGGTGGCAGTGGTGTGAACTGCTTTGAAGTTTGGGATCAGAGTTGCTGCTTTGAGGAGCCAGTTATGGAGAGGGTTGAGTCTGGGAGGGGCATAAGGGCCCGAATGTTCGAGAAGTTGAGCAAAGAGAATTCTCTGGATGGTTCGGCTTCCGGTTCGGGTGGAGCTCCGGATGTGGGGTGGGTTTCTGAGTTGATCAAGTGA 1137 0.5954 MMLGESHRSNPTVHVPPWPPLLDDPTAEMYSPFSGTRLSVHSDSNAADYSPYYMHEAISALQRYLPSNDVVDDDSDSEAAREIDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPDFRKGGCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHSPRSVDSYDGSPLRHAMESSCAKTLPFLSSPGSDSPPAEDSPPMSPANRSLGRSVNVSEMMASLRNLQLSKVKSLPSSWNVPMGSPGYGSPRGPMIRSGFCSLPSTPTEGPGGSGVNCFEVWDQSCCFEEPVMERVESGRGIRARMFEKLSKENSLDGSASGSGGAPDVGWVSELIK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03358 378 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872
Arst3g03358 378 MobiDBLite consensus disorder prediction 1 21 - -
Arst3g03358 378 MobiDBLite consensus disorder prediction 229 252 - -
Arst3g03358 378 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 159 IPR000571 GO:0046872
Arst3g03358 378 PANTHER UNKEMPT FAMILY MEMBER 12 378 IPR045234 -
Arst3g03358 378 SMART c3hfinal6 169 192 IPR000571 GO:0046872
Arst3g03358 378 SMART c3hfinal6 134 160 IPR000571 GO:0046872
Arst3g03358 378 Gene3D - 135 198 - -
Arst3g03358 378 FunFam Zinc finger CCCH domain-containing protein 66 92 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03358 Arst-Chr3 78589152 78590786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03358 84 283 C2H2 Transcription Factor Family AT5G12850 50.962 7.84e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst3g03358 zf-CCCH 2.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03358 - - jre:109010264 572.392