Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03311 ATGGCTGGAATACTTCCCGGAGTTGAATGTGCTAGAAGGAGAAGACTCCATCAAAGTAAAGGATTCTTGGATTTACCATCTTCCACGGCTTCTTCACATAACTCTACAAGGCGCACTTCTTTTGGTTTGTATGCAGCAAACCATGAGCCCCTTCATTCCTCTTCATCTCCTTCTTTGCTGCATAGAAGCGTGATCTACCAGGCGCAACCAGATTTGAGTATGGTTGGAGAAGCCAGAGAAGCCAGACAAAGATTGGATGACAAATTCAGATCACACAGGAAATTGGAAAACAAAAGCATAAAATGTTCGGAAAATAGACAAGCAAGCATAGCAGAATTGCACACAGAGGTATATGGTTCAAAGAAAAGTGGTTCTAGAAGGTTCAATTGGTCCAAATTGAGGTGGAAAGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAGTTATTCAAGGTTGGAGAGACTCTGATGCATCTCCCTTGTGCCCATAAGTTCCATTCCAAATGCTTGAACCCATGGTTTGAAAATAATTCACATTGTCCATGTTGCAGAACTGCCATTATTTAA 567 0.4215 MAGILPGVECARRRRLHQSKGFLDLPSSTASSHNSTRRTSFGLYAANHEPLHSSSSPSLLHRSVIYQAQPDLSMVGEAREARQRLDDKFRSHRKLENKSIKCSENRQASIAELHTEVYGSKKSGSRRFNWSKLRWKASEQEDCAVCLELFKVGETLMHLPCAHKFHSKCLNPWFENNSHCPCCRTAII 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03311 188 Pfam Ring finger domain 142 184 IPR001841 -
Arst3g03311 188 CDD RING-H2_PA-TM-RING 142 184 - -
Arst3g03311 188 Coils Coil 78 98 - -
Arst3g03311 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 188 IPR013083 -
Arst3g03311 188 SUPERFAMILY RING/U-box 130 187 - -
Arst3g03311 188 PANTHER SI:CH211-59O9.10 13 187 - -
Arst3g03311 188 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Arst3g03311 188 FunFam Zinc finger family protein 117 188 - -
Arst3g03311 188 SMART ring_2 143 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03311 Arst-Chr3 73416218 73417957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03311 138 187 C3H Transcription Factor Family AT1G49850 58.000 2.79e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03311 - - gmx:100527583 259.996