Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03307 ATGGCTTTTCGCGACCACCAACCACACGAAATTACTTTTCAGTCCTTCACGGACGAGCAACATTTAAATCACAACAGAGACATGCAGAGGATGCTAACTCTCTCCGGCGCCGGCGATGGAGGACCGGCTCCGACGTGGCTGAACAACGTCCGGCAGCAGAATTTCCTGCACCTTCAGCCGAACGCGTCGTCGGCACGAAACGACGACGTTCGAGACATGATGGCGGCGGAAGCTACGTCAGCGGAGAAGAGCATGGATCATCGGAAGAACTACCTCCAGCAGCAGCGGACGATGACGGAAAGTAACAACTGCGACTCAGAGGATGCGGCGGAGTACAAGGCGGACATCCTAGGACACCCGCTATACGAGCAGCTGCTGTCGGCGCACGTGTCGTGTCTGAGGATCGCGACGCCCGTTGACCAGCTACCGAGAATCGACGCTCAGTTGCAGCAGTCGCAGCGCGTGGTGGAGAAGTACTCTGCGCATGGGAATAATGGTGCTCTCAATGAGAAGGAGCTTGATAACTTCATGACACATTACGTTCTATTGCTTTGCGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTCCATGCCATGGAAGCAGTGATGGCTTGTTGGGAGCTGGAGCAGTCTCTACAAAGCTTGACGGGTGTATCTCCCGGAGAAGGGACAGGTACGACGATGTCGGACGACGAAGACGATCAGGCGGCAGAGAGCAATGGCAACTTGTACGAAGGATGTTTAGATGGCGCTGATAGTCTCAGCTTTGGCCCTCTTGTTCCAACTGAAACTGAAAGATCTCTAATGGAGCGTGTTCGCCAGGAGCTAAAGCACGAGCTAAAACAGGGTTACAAGGATAAAATTGTTGACATAAGAGAAGAAATTCTGCGAAAGAGAAGAGCCGGGAAGCTTCCTGGGGATACCACCTCTCTCTTAAAAGCTTGGTGGCAATCTCATTCTAAATGGCCCTATCCAACGGAAGAAGACAAGGCGAGGCTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAGAGGAAAAGGAATTGGCATACTAATCCTTCGTCGTCTACTGGCGGCAAAAGCAAGCGCAAGAATACTAATAATAATAGGTGA 1137 0.5092 MAFRDHQPHEITFQSFTDEQHLNHNRDMQRMLTLSGAGDGGPAPTWLNNVRQQNFLHLQPNASSARNDDVRDMMAAEATSAEKSMDHRKNYLQQQRTMTESNNCDSEDAAEYKADILGHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSAHGNNGALNEKELDNFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGTTMSDDEDDQAAESNGNLYEGCLDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGGKSKRKNTNNNR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03307 378 MobiDBLite consensus disorder prediction 353 378 - -
Arst3g03307 378 SMART KNOX2_2 163 218 IPR005541 GO:0003677|GO:0005634
Arst3g03307 378 SMART HOX_1 298 363 IPR001356 GO:0003677
Arst3g03307 378 ProSiteProfiles 'Homeobox' domain profile. 296 359 IPR001356 GO:0003677
Arst3g03307 378 Pfam KNOX1 domain 112 153 IPR005540 GO:0003677|GO:0005634
Arst3g03307 378 SUPERFAMILY Homeodomain-like 298 361 IPR009057 -
Arst3g03307 378 CDD homeodomain 299 360 IPR001356 GO:0003677
Arst3g03307 378 SMART ELK_2 276 297 IPR005539 GO:0003677
Arst3g03307 378 Pfam ELK domain 276 297 IPR005539 GO:0003677
Arst3g03307 378 Gene3D - 295 370 - -
Arst3g03307 378 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Arst3g03307 378 FunFam homeobox protein knotted-1-like 3 isoform X1 297 358 - -
Arst3g03307 378 ProSiteProfiles ELK domain profile. 276 296 IPR005539 GO:0003677
Arst3g03307 378 Pfam Homeobox KN domain 316 355 IPR008422 GO:0003677|GO:0006355
Arst3g03307 378 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 361 - -
Arst3g03307 378 Pfam KNOX2 domain 170 217 IPR005541 GO:0003677|GO:0005634
Arst3g03307 378 MobiDBLite consensus disorder prediction 217 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03307 Arst-Chr3 73207317 73218664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03307 99 372 Homeobox Transcription Factor Family AT5G25220 80.144 1.03e-159 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Arst3g03307 KNOX2 4.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03307 - - gmx:100816347 579.711