Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03205 ATGAACATGGGGAGAACACTTGCACAGTACAGTGCAGACGCTGAGATTCTTGCAGAGTTCGAGCAATCAAACGTGTCCGGTAAATCATTTGACTACTCAAAGTCAGTGGTTGACCCACCGAAATCAGTCTCTGAGGAGAAGATGACTGCCTACTTGTCAAGAATCCAAAGGGGCGGACTCATCCAGCCCTTTGGCTGCATGCTGGCAGTCGAAGAACCGACTTTCAACATCATTGGCTACAGCCAGAATTCATTTCACCTCTTGGGTGTCAAGACTCAGTCCGACACCGAAGAGTTAATGGGTGGTCTTCTTGGAGTTGATGCCACTACACTCTTCACTCCTGCTTCCGGGGCTTCGCTTGCGAAAGCTGTGGCATCGAGGGAAATCTCGCTTCTTAATCCTGTTTGGGTGTACGCAAGGGCAACGCAGAAGCCGTTCGGCGGAGACATTGGTCTTCTGTGTGACTCTGTTGTAGGGGAAGTTCAAAAGCTTACCGGATATGACAGAGTTATGGTGTATAAATTCCACGAGGACGATCACGGGGAGGTTGTTTCGGAGATTAGGAGGTTGGATTTGGAGTCTTATTTGGGCCTGCACTACCCTGCCACTGATATCCCTCAAGCCTCAAGATTCTTGTTCAAGCAAAATCGCGTTCGGATGATTTGTGATTGTAATGCTAAGCCGGTTAAGGTAACTCAGAACCAAGAGTTGAGTCAACCACTTTGCTTGGTGAACTCAACTCTGAGGGCGCCACATGGTTGTCACACGCAGTACATGGCTAACATGGGCTCCATTGCTTCTCTGGTTATGTCAATTGTGGTAAATACCAAAGATTCCATGAAGCTATGGGGTTTGCTAGTGTGCCATCACACTGCGCCGCGCTATGTGCCTTTTCCGGTTCGCTACGCTTGTGAATTTCTTATGCAGGCTTTTGGAGTGCAGCTTTACATGGAGATTCAGTTAGCAGCGCAAATGGCAGAGAAAAGGATTCTCAAGACACAAACTTTGCTGTGTGACATGCTCCTTCGCGACGCGCCGTTTGGGATTGTTACTCAGTCTCCTAATATCAAGGATCTTGTCAAGTGTGATGGGGCTGCCCTGTATTATGATGGGAACTGTTGGTTGTTAGGCACAACGCCGTCGGAATCACAGGTAAAAGACATTGCTGAATGGTTGCTTAGTACTCACGGTGACTCGACCGGTTTGAGTACAGACAGTTTGGCTGATGCTGGTTATCCTGGGGCTGTTTTACTTGGGGATGCAGTGTGTGGCATGGCAATGGCGCGAATCAGTTCGAGGCATTTCTTGTTCTGGTTCCGATCTCACACTGCTAAGGAAGTTAAGTGGGGAGGGGCCAAACACCATCCTGAGGATAAGGATGATGGAAGGAAAATGAATCCAAGATCATCATTCAAAGCATTTCTTGAAGTTGTTAAGAGCAAAAGTTCGCCTTGGGAGGCTTCCGAAATCAATGCTATTCACTCATTGCAACTTATAATTAGAGATTCATTTCACAATTCAGAGAATAGTGGTATTAAGGCTATGAACTACATACAGAGAAGTGATGCTTCAAGTGGTGGGATTGATGAGCTAAGTTCAGTAGCATTTGAAATGGTGAGGTTAATTGAGACGGCAACTGTGCCGATTTTCGGGGTTGACACAGGTGGCCTAATCAATGGTTGGAATGTGAAAATTGCGGAATTGACAGGTTTGCTGGCAAATGAAGCTATTGGAAAATCACTAGTGAATGAAGTAGCGCATGCAGACTCGCGCAACAATCTTGAAAATATTCAAAGTAAAGCCCTGCAAGGCTTAGAAGACAAGAATTTTGAGTTGAAATTGAAACATTTTGGGAATCAACAAGAAAATGGAGTTGTATATCTCATAGTGAATGCTTGCACAAGTAGAGATTACACAAATGCTGTTGTTGGGGTATGCTTTGTAGGCCAAGATATCACTTGTGAGAAAGTTGTTCTGGACAAATTTGTCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCTCAATCCGCTTATTCCGCCGATATTTGCTTCTGACGAGAGCGCCTGCTGCTCCGAATGGAATGCAGCCATGGAAAGGATAACTGGCTGGAAGAGAGACGAAGTCATAGGAAAACTTCTTCCCGGGGAAATCTTTGGAAGCTTTGTTAGACTGAAAGGTCAAGATACACTGACTAACTTCATGATCTTGCTTTACCGGGGAATTAGCGGACAAGAATTCGAGAAGTTTCCCTTCGGATTTTTTGATAGGAACGGAGAGTTTATAGAGGCTTACATCACTGCTAACAAGAGGATCGATACGAGTGGGAACATGATTGGCTGTTTCTGCTTCTTGCAGATTGTATCTCGCGATCCGAATCAGCCTTCGGATGGACAAAATCTTCCTCAAGGGAGGAAGAGTATATCTGAGTCTAAGGAGTTTGCTTATATATTACAAGAGATGATGAATCCTTTAAACGGTATTCGGTTTACGCATAAGCTTCTGGAGAAAACAGCTGTCTCAGAAAGCCAGAAACAGTTTCTTGACACTAGTGCTGCTTGTGAAAGACAGATAATGGCAATTATTGAGGAAACATACATAGGAAGTATCAATGAAGGCAGTGTGCAGCTAAACATGGAGGAATTTCTTCTTGGGGGTATTCTAGATGCCATTGTGAGTCAAGTGATGCTGTTGGTGAGAGGAAAAAGCTTGCAGCTGTTTCATGAAATTCCTGATGAAATGAAAACTCTTGCTCTGTATGGTGATCAAATAAAGCTTCAAGTGGTCTTATCTGACATTCTGCTTAATGTAGTCAACCATACACCATCTCCAAATGGCTGGGTTGAAATCAAGATTTCACCTGGTTTGAAGATAATTCAGGACGGCCATGAGTTTATCCATTTGAAGTTCAGAATGAGCCATTCCGGTCAAGGTCTTCCTTCTAACACACTTCAGGATATGTTTGAAGAAGGGAATCAATGGACTACACAAGAAGGTTTAGGGCTATATATGTCAAGAAAAATGCTTAGTAGGATGAATGGTCATGTTCACTATGCGAGAGAACAAAATAAGTGCTACTTCCTCATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCAAGCGGAGACAAGCATGTTGAGTTAA 3159 0.44 MNMGRTLAQYSADAEILAEFEQSNVSGKSFDYSKSVVDPPKSVSEEKMTAYLSRIQRGGLIQPFGCMLAVEEPTFNIIGYSQNSFHLLGVKTQSDTEELMGGLLGVDATTLFTPASGASLAKAVASREISLLNPVWVYARATQKPFXGGDIGLLCDSVVGEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRLDLESYLGLHYPATDIPQASRFLFKQNRVRMICDCNAKPVKVTQNQELSQPLCLVNSTLRAPHGCHTQYMANMGSIASLVMSIVVNTKDSMKLWGLLVCHHTAPRYVPFPVRYACEFLMQAFGVQLYMEIQLAAQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPNIKDLVKCDGAALYYDGNCWLLGTTPSESQVKDIAEWLLSTHGDSTGLSTDSLADAGYPGAVLLGDAVCGMAMARISSRHFLFWFRSHTAKEVKWGGAKHHPEDKDDGRKMNPRSSFKAFLEVVKSKSSPWEASEINAIHSLQLIIRDSFHNSENSGIKAMNYIQRSDASSGGIDELSSVAFEMVRLIETATVPIFGVDTGGLINGWNVKIAELTGLLANEAIGKSLVNEVAHADSRNNLENIQSKALQGLEDKNFELKLKHFGNQQENGVVYLIVNACTSRDYTNAVVGVCFVGQDITCEKVVLDKFVKLEGDYKAIIQSLNPLIPPIFASDESACCSEWNAAMERITGWKRDEVIGKLLPGEIFGSFVRLKGQDTLTNFMILLYRGISGQEFEKFPFGFFDRNGEFIEAYITANKRIDTSGNMIGCFCFLQIVSRDPNQPSDGQNLPQGRKSISESKEFAYILQEMMNPLNGIRFTHKLLEKTAVSESQKQFLDTSAACERQIMAIIEETYIGSINEGSVQLNMEEFLLGGILDAIVSQVMLLVRGKSLQLFHEIPDEMKTLALYGDQIKLQVVLSDILLNVVNHTPSPNGWVEIKISPGLKIIQDGHEFIHLKFRMSHSGQGLPSNTLQDMFEEGNQWTTQEGLGLYMSRKMLSRMNGHVHYAREQNKCYFLIDLELRTRKERQRNLQAETSMLS 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03205 1053 ProSitePatterns Phytochrome chromophore attachment site signature. 250 259 IPR013516 -
Arst3g03205 1053 FunFam Phytochrome 531 663 - -
Arst3g03205 1053 CDD PAS 680 788 IPR000014 -
Arst3g03205 1053 Pfam Phytochrome region 333 508 IPR013515 GO:0006355|GO:0009584
Arst3g03205 1053 ProSiteProfiles PAS repeat profile. 535 606 IPR000014 -
Arst3g03205 1053 Gene3D - 856 1029 IPR036890 -
Arst3g03205 1053 FunFam Phytochrome 136 331 - -
Arst3g03205 1053 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 876 1035 IPR036890 -
Arst3g03205 1053 Gene3D PAS domain 541 656 - -
Arst3g03205 1053 SMART gaf_1 150 330 IPR003018 GO:0005515
Arst3g03205 1053 ProSiteProfiles PAS repeat profile. 669 747 IPR000014 -
Arst3g03205 1053 ProSiteProfiles Histidine kinase domain profile. 818 1037 IPR005467 -
Arst3g03205 1053 SUPERFAMILY GAF domain-like 139 316 - -
Arst3g03205 1053 PANTHER OS08G0260000 PROTEIN 47 870 - -
Arst3g03205 1053 Gene3D PAS domain 682 794 - -
Arst3g03205 1053 Gene3D - 135 310 IPR029016 -
Arst3g03205 1053 FunFam Phytochrome 682 790 - -
Arst3g03205 1053 SUPERFAMILY PYP-like sensor domain (PAS domain) 683 785 IPR035965 -
Arst3g03205 1053 CDD PAS 546 653 IPR000014 -
Arst3g03205 1053 Pfam His Kinase A (phospho-acceptor) domain 813 867 IPR003661 GO:0000155|GO:0007165
Arst3g03205 1053 SUPERFAMILY PYP-like sensor domain (PAS domain) 541 649 IPR035965 -
Arst3g03205 1053 SUPERFAMILY GAF domain-like 328 505 - -
Arst3g03205 1053 Gene3D PAS domain 54 252 - -
Arst3g03205 1053 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 150 310 IPR016132 -
Arst3g03205 1053 Pfam GAF domain 150 320 IPR003018 GO:0005515
Arst3g03205 1053 Pfam PAS fold 50 147 IPR013654 GO:0006355
Arst3g03205 1053 NCBIfam PAS domain S-box protein 542 657 IPR000014 -
Arst3g03205 1053 SUPERFAMILY PYP-like sensor domain (PAS domain) 55 144 IPR035965 -
Arst3g03205 1053 Pfam PAS fold 669 788 IPR013767 GO:0006355
Arst3g03205 1053 Pfam PAS fold 538 653 IPR013767 GO:0006355
Arst3g03205 1053 CDD HisKA 811 866 IPR003661 GO:0000155|GO:0007165
Arst3g03205 1053 SMART pas_2 668 738 IPR000014 -
Arst3g03205 1053 SMART pas_2 537 604 IPR000014 -
Arst3g03205 1053 FunFam Phytochrome 325 455 - -
Arst3g03205 1053 SMART HKATPase_4 923 1037 IPR003594 -
Arst3g03205 1053 SMART HisKA_10 811 875 IPR003661 GO:0000155|GO:0007165
Arst3g03205 1053 CDD HATPase_Phy-like 922 1035 IPR044767 -
Arst3g03205 1053 PRINTS Phytochrome signature 112 134 IPR001294 GO:0006355|GO:0009584
Arst3g03205 1053 PRINTS Phytochrome signature 538 554 IPR001294 GO:0006355|GO:0009584
Arst3g03205 1053 PRINTS Phytochrome signature 631 648 IPR001294 GO:0006355|GO:0009584
Arst3g03205 1053 PRINTS Phytochrome signature 557 572 IPR001294 GO:0006355|GO:0009584
Arst3g03205 1053 PRINTS Phytochrome signature 651 671 IPR001294 GO:0006355|GO:0009584
Arst3g03205 1053 Gene3D - 322 508 IPR043150 -
Arst3g03205 1053 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 923 1033 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03205 Arst-Chr3 60358600 60364197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03205 8 1037 Histidine Kinase Gene Family AT4G18130 59.614 0.0 1342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03205 K12123 - gmx:100808192 1641.32