Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03201 ATGAAGCAGTCTTTTGATCCTTCATCTTTGGGTCCTTCAAAGATTCCATCGATAAATATACCTAGAGGAGTGGGGTGCAGTGCACGAGGGGTTTCATCTGGATCTGATTTATACCATGCGTCATCTGATGCTAGTCTCTTTTCCAGTTCATTACCTGTTCTTCCACACGAAAAGTTGAACATAAATGATACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTGGCTTTGAAAAGCTTCAAGACAAGGGTTCATTAGAAGGTGTCGGTGCTCATGCAGTGGGAACCACGCTTCCTGATGATGAAGACGAGCTTTTGGCTGGCATAATGGATGATTTTGATCTAAGTGGTTTACCTGGTTCTCTTGAGGACTTGGAAGAGTATGATCTTTTTGGAGATATGGATCTAGATCCTGATCAGGATGGTTTCAGTGCGGGCATGTCCAAATTGAACTTCTCCGATAGTGTTGTTAGCAACGGTTTGCCTCATTATTCTTTTCCTAATGGTGTTGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACGCTATTTGTTCGAAATATTAACAGCAACGTGGAGGATTCAGAGCTGAGAGCTCTTTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGTTTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTTGACATACATTTCTCAATACCGAAGGATAACCCATCAGACAAGGATATCAACCAAGGAACCTTGGTGGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAAGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTCATTGAATATTATGATGTCAGAGCTGCAGAAGCAGCACTAAAATCATTAAATAGAAGTGACATAGCTGGTAAACGGATAAAGCTGGAGCCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTATTGCTCCAACTAAATCAAGAGCTTGATCAAGATGAAGCTCGGAACTTTCGGTATCAAGTGAGTTCACCTGTGGCCAACTCTCCACCAGGTAACTGGATGCAGTTCAATAGTCCTGTCGAGCAGAATTCTATGCAAACGATCAGTCATTCTCCTGGCTCTAGGATCATGAGCCCAACAACTGGTAGCCACTTGCCAGGGCTGGCTTCAATTTTGCAACCTCAGGTATCGAATACTGTGAAGGGTGCAACTATTGACAAGGACTTTGGAAGGAGCAATCATGGAGAGCACATTTTTACCAGTGTGAATTCAACGCAAGGAGCTACTTTTCAGTCACATTCACTTCCAGAGCCCAAATTCAGCCAATATCGTGGATCTTTGTCCTTGTTTGGTCCATCAACATCAAAATCAAATGAATCTTCGATGGAGACCTTATCTGGGGCACAGTTTTTATGGGGAAGTCCAACCCTTTACTCGGAACGTAATAAGCCTTTAGCTTGGCCAAGACCAGCTGCGGTGCATCCATTTACATCAAATGGCAAGGGGCATGGCTTCCCATACTCAAGTCAAAGTACTTCCTACGTTGGGGCATCCCACCATCATAACAATCATCATGTTGGTTCTGCTCCATCAGGTTTGCCACTAGAGAGGCACTTTGGTTTTCCTGAGTCACCTGAAACTTCGATCATGAATAATGTCGGTTATGGAGGCATGGGTCTGGGGCACACTGATGGAAATTACGTGGTTAAAACGAGTGGGTCTGTAAATGCTGGCATTACTATTCCGAGAAATATTTCTGAGAACGGTTCATCAAACCTTAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTGTTTTTGGGTAGTGGTCCATATGCAGGACTACCACCTACCACCATGGATAGTTTGACCGACCGTTCTCAGAGCAGATGGATTGAGAACAATGGAAGCCAAGTTGATAGCAAGAAGCAATTCCAGCTTGATTTGGATAAGATTAAATGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATTCCAAATAAGTACACGTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAAGGGTACATATGATTTTCTCTATCTCCCAATTGACTTTAAGAATAAATGCAATGTGGGATATGCATTTATCAATATGTTGTCACCCTCTCTTATTATTCCATTCTATGAGACATTCAATGGGAAGAAATGGGAGAAGTTTAATAGTGAAAAGGTTGCATCTTTGGCATATGCTCGAATACAAGGGAAGACTGCACTTGTGAGCCATTTCCAAAATTCAAGTTTGATGAACGAAGACAAGCGCTGCCGCCCAATTCTCTTCCATTCAGATGGTCCTGAAACCAGTGATCAGATCATGCAAGAGCATCTTCCCTCCAGCATTTTGGAATGTTCAGGCACTTAA 2481 0.4248 MKQSFDPSSLGPSKIPSINIPRGVGCSARGVSSGSDLYHASSDASLFSSSLPVLPHEKLNINDTENGYQSVDDISSGFEKLQDKGSLEGVGAHAVGTTLPDDEDELLAGIMDDFDLSGLPGSLEDLEEYDLFGDMDLDPDQDGFSAGMSKLNFSDSVVSNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLLLQLNQELDQDEARNFRYQVSSPVANSPPGNWMQFNSPVEQNSMQTISHSPGSRIMSPTTGSHLPGLASILQPQVSNTVKGATIDKDFGRSNHGEHIFTSVNSTQGATFQSHSLPEPKFSQYRGSLSLFGPSTSKSNESSMETLSGAQFLWGSPTLYSERNKPLAWPRPAAVHPFTSNGKGHGFPYSSQSTSYVGASHHHNNHHVGSAPSGLPLERHFGFPESPETSIMNNVGYGGMGLGHTDGNYVVKTSGSVNAGITIPRNISENGSSNLRMRSSPRLSPVFLGSGPYAGLPPTTMDSLTDRSQSRWIENNGSQVDSKKQFQLDLDKIKCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSDGPETSDQIMQEHLPSSILECSGT 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03201 826 MobiDBLite consensus disorder prediction 1 15 - -
Arst3g03201 826 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 259 IPR000504 GO:0003723
Arst3g03201 826 MobiDBLite consensus disorder prediction 1 22 - -
Arst3g03201 826 Pfam RNA recognition motif 2 688 784 IPR007201 -
Arst3g03201 826 SUPERFAMILY RNA-binding domain, RBD 183 346 IPR035979 GO:0003676
Arst3g03201 826 Gene3D - 270 362 IPR012677 -
Arst3g03201 826 SUPERFAMILY RNA-binding domain, RBD 690 774 IPR035979 GO:0003676
Arst3g03201 826 CDD RRM2_MEI2_like 270 340 - -
Arst3g03201 826 Gene3D - 175 269 IPR012677 -
Arst3g03201 826 CDD RRM1_MEI2_like 185 261 IPR034453 -
Arst3g03201 826 FunFam MEI2-like protein 5 isoform 2 175 269 - -
Arst3g03201 826 FunFam Protein MEI2-like 1 270 365 - -
Arst3g03201 826 CDD RRM3_MEI2_like 691 776 IPR034454 -
Arst3g03201 826 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
Arst3g03201 826 SMART rrm1_1 187 255 IPR000504 GO:0003723
Arst3g03201 826 SMART rrm1_1 690 766 IPR000504 GO:0003723
Arst3g03201 826 SMART rrm1_1 272 340 IPR000504 GO:0003723
Arst3g03201 826 PANTHER RNA RECOGNITION MOTIF-CONTAINING 35 802 - -
Arst3g03201 826 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 252 IPR000504 GO:0003723
Arst3g03201 826 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 338 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03201 Arst-Chr3 60294292 60301251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03201 181 379 Eukaryotic Initiation Factors Gene Family AT1G71770 25.333 4.40e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03201 - - gmx:100800877 1376.69