Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03116 ATGAGCCTCCAGTCCCCTCTGAATCCCCAAACAGGATCAAACAGAAGGAGAAGGACTGCACCGATTCCCCCTTCCAACGATGTAATCGACGTTGACAATTTCGTCTTCACCCCAGTCACTCACAAGGGCACAGACAAGACCACACCCATCTCCGTCGAACACTACGCCCTAGACAGGGACCTCCAGCTCGCAATCGCCGCCTCCCTCGCTGTCCCGCTACCTCATCTCATCAACCTATCCTCCGACGACGACGACGACGTCAGCATCCTCGCTGCAAAACCCGAAAATACCCCTTTCGGGAAACGAAGAAAGAGGGACAACAATGAGAACGAGAAAGGCGAGTCCTCCAACAGCGCCCCACCATTCATCTGCAAAATCTGCACCGAAACAAAGTCATTAGTGGAGTCTTTCTGCGTCACCGGTTGCCACCACTCTTACTGCAACGACTGTGTGATACTGTATGTTGGGTCGAAGCTTCAGGAGAATGTGATTAACATTCGGTGTCCGGTGCCAGGATGCAAGGGGCTTTTAGAGCTGGAAGATTGTCGTGAGATTCTCCCGAAGGAGGTTTTCGATCGATGGGGGATGGCCATGTGTGAGGCTGTGGTTGTTGAGGGTGAGAGATTCTATTGCCCTTTCAAGGACTGCTCAGCGCTTATGATCAACGACGGCCGAGAGTTGGTGAGGCAATCAGAGTGCCCTAACTGTCGGAGGCTGTTCTGTGCCCAGTGCAAGGTTGCTTGGCATGATGGGATTGGCTGCGACGAGTTTCAGACCCTGAATAAGGATGAGAGGGAGAAGGAGGATATTATGCTGATGAATCTGGCTAAAACCAAGAAGTGGAGGAGGTGCCCCATGTGCAAGTATTATGTTGAGAAATCTGAGGGCTGCATGTACATGAAATGCAGATGTGGATATGCCTTCTGTTACAGCTGTGGAGCCCTTTCCAACAAAAATACCCACTATTGCAGCAGCTGCAAGCGTTAA 987 0.5147 MSLQSPLNPQTGSNRRRRTAPIPPSNDVIDVDNFVFTPVTHKGTDKTTPISVEHYALDRDLQLAIAASLAVPLPHLINLSSDDDDDVSILAAKPENTPFGKRRKRDNNENEKGESSNSAPPFICKICTETKSLVESFCVTGCHHSYCNDCVILYVGSKLQENVINIRCPVPGCKGLLELEDCREILPKEVFDRWGMAMCEAVVVEGERFYCPFKDCSALMINDGRELVRQSECPNCRRLFCAQCKVAWHDGIGCDEFQTLNKDEREKEDIMLMNLAKTKKWRRCPMCKYYVEKSEGCMYMKCRCGYAFCYSCGALSNKNTHYCSSCKR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03116 328 MobiDBLite consensus disorder prediction 1 20 - -
Arst3g03116 328 Pfam IBR domain, a half RING-finger domain 275 319 IPR002867 GO:0008270
Arst3g03116 328 Pfam IBR domain, a half RING-finger domain 205 254 IPR002867 GO:0008270
Arst3g03116 328 MobiDBLite consensus disorder prediction 1 27 - -
Arst3g03116 328 FunFam RBR-type E3 ubiquitin transferase 256 328 - -
Arst3g03116 328 SUPERFAMILY RING/U-box 265 327 - -
Arst3g03116 328 ProSitePatterns Zinc finger RING-type signature. 142 151 IPR017907 -
Arst3g03116 328 SMART ibrneu5 192 254 IPR002867 GO:0008270
Arst3g03116 328 SMART ibrneu5 264 326 IPR002867 GO:0008270
Arst3g03116 328 SUPERFAMILY RING/U-box 120 201 - -
Arst3g03116 328 Gene3D - 251 328 - -
Arst3g03116 328 MobiDBLite consensus disorder prediction 91 118 - -
Arst3g03116 328 CDD Rcat_RBR_unk 280 314 - -
Arst3g03116 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 203 IPR013083 -
Arst3g03116 328 MobiDBLite consensus disorder prediction 97 112 - -
Arst3g03116 328 FunFam RBR-type E3 ubiquitin transferase 119 205 - -
Arst3g03116 328 SMART ring_2 284 326 IPR001841 -
Arst3g03116 328 SMART ring_2 124 171 IPR001841 -
Arst3g03116 328 SUPERFAMILY RING/U-box 197 258 - -
Arst3g03116 328 ProSiteProfiles Zinc finger RING-type profile. 124 170 IPR001841 -
Arst3g03116 328 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 99 327 IPR031127 GO:0004842|GO:0016567
Arst3g03116 328 CDD BRcat_RBR_unk 205 257 - -
Arst3g03116 328 ProSiteProfiles TRIAD supradomain profile. 120 328 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03116 Arst-Chr3 54679551 54681098 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03116 124 314 C3H Transcription Factor Family AT2G19610 31.841 9.76e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03116 K11975 - qsa:O6P43_021976 406.757