Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03113 ATGGGCAACAAGGTTGGAACGCCATGCGTGTGCATTCCCATAAAAAGAATGAAAAGAAAGGAAACAAGAGTTGCTGCTAATTTTCCTTCCATCAGTGATTTGAGCCTTGAAAATTTTCTGGACGCCATTGAAGAACAAACTCCTATTCATCTTGACGTCCCATCTTTTCTTTGCCAAATCTGCTTTGAATCGAAGCCTCTAAACCAGTCCTTCGACTTGGAGGGTTGCACGCACTTCTACTGCACAAGATGCGTAGCCCAATACATCGTGGCGAAGCTCAAAGACAATGTGTTCAATGTCGTGTGCCCTGAGCCAACATGCTCTGGAATCTTGAACCCTAACCACTGCAAATCAATTCTACCGAGCAATGTTTTCGAATGGTGGGAGCGCGTTCTAAGCGAATCGGCGATCCCTGAAAATGTCAAATTCTATTGTCCTTTCAGTGATTGCTCTGCCTTGTTAATCAACAACAATGATGATGGAAAAAGTAGGATGCTGGGATCGGATTGTCCTCATTGCAAGAGAAGCATTTGTGTCAAGTGTCAGGCACCTTAG 555 0.4432 MGNKVGTPCVCIPIKRMKRKETRVAANFPSISDLSLENFLDAIEEQTPIHLDVPSFLCQICFESKPLNQSFDLEGCTHFYCTRCVAQYIVAKLKDNVFNVVCPEPTCSGILNPNHCKSILPSNVFEWWERVLSESAIPENVKFYCPFSDCSALLINNNDDGKSRMLGSDCPHCKRSICVKCQAP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03113 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 141 IPR013083 -
Arst3g03113 184 Pfam IBR domain, a half RING-finger domain 141 183 IPR002867 GO:0008270
Arst3g03113 184 SUPERFAMILY RING/U-box 55 138 - -
Arst3g03113 184 ProSiteProfiles Zinc finger RING-type profile. 58 103 IPR001841 -
Arst3g03113 184 FunFam RBR-type E3 ubiquitin transferase 54 139 - -
Arst3g03113 184 ProSiteProfiles TRIAD supradomain profile. 54 184 IPR044066 -
Arst3g03113 184 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 35 182 IPR031127 GO:0004842|GO:0016567
Arst3g03113 184 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03113 Arst-Chr3 54369881 54370435 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03113 41 184 C3H Transcription Factor Family AT2G19610 25.828 1.41e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03113 K11975 - rcu:8259039 157.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03113 3 54369881 54370435 Arst3g03113 3 54369881 54370435 ECH