Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03076 ATGGGGATGAAGAAGAGCGAAAAAGGCAGCAAGAAAGTGATGGAAAATAAGAATGAGAAGAAAGATGTTGGCAATGCTGCCAGCAATGCAACCATAGGAAATGACAGCGTTTTTGCTTCTTGCTCCTTCTCTAGCCTTGGCCTTCACCCTTCCTTATGCGATGAACTGCGTGAAAAATTGGGATTCGAGGTTCCAACTCTGGTGCAAGCTCAAGCCATTCCTGTTATTCTCGCTGGCCGTCATGCACTTATTAATGCTGCCACAGGCACAGGGAAGACAGTTGCCTACTTAGCTCCACTTATTCATCACTTGCAGAATTATGATACTCGCATACAACGCTCTGATGGAACATTTGCGTTGGTCCTTGTACCGACGCGTGAGCTATGTCTGCAGGTTTATGAAATTCTTCAAAAGCTATTGCATCGATTCCATTGGATTGTTCCCGGGTATGTTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTACGCAAAGGCATATCAATTCTTATAGCAACACCTGGGCGCCTTTTAGATCATTTGAAGAATACATCATCATTCTTGTACACAAATGTATGGTTTTACAGGATTTTGGAATTAGGATTTGGACAAGATATACAGGAAATACTAGATCTTTTGGGTTCAAGGAAAGCAGCAAATGATTACAAGGAGAGTACAGTTCCAAGAAACTCTGAATTTCAAAGGCAGAATTTGCTTTTTTCTGCCACCTTAAATGAGAAAGTGAACCATCTTGCTAAAATAAGTTTACACAATCCAGTGATGATTGGTCTTGAGGGTAAAACAAGAAAACCAGTATCAACAATTGAAAGCATTGATTCTTCAGAGTCTGATGAAGATGATGAAGTCAAGTATTCCAGTAAAATGCCAACAGCTGTAGATTATAAAATCCCCAGACAGTTAATTCAGAGATATGTGAAAGTGCCTTGTGGTTCTCGGCTTGCTGTTCTTCTTTCAATTCTAAAGCATCTTTTTGAAAGAGACACTTCACAAAAGGTTGTGGTATTCTTTTCGACATGTGATGCGGTAGACTTTCACCATTCGCTACTAAGTGAGTTCCACTTCTCGACTGATCCTCAAACAAAAGAAAGGGTCATACAGATGTTTCTTGGATGCCAAACTTTTCGATTGCATGGTAATATGGAACATGAAGACCGGAGATCTACTTTTCAGGCTTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTCGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTACACAGAGTTGGTAGAACTGCTCGTCTGGGTGAAAGGGGAGAGTCCTTATTATTTCTGCAACCAGTTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAGCAGAGTATCCTCTTCTCAAAGTGTTGGATAATTTTACATTACACGGACAGAACAAACACGTAAAGAAGTCTGTTTTCATCGACTTGCATCCTTGGGTCCTTTGTCTCCAGAAGGCACTTGAATCATTCATCATTTCCAAGCCCAAGATGGATGAACTTGCTAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACACAGCACATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCATGTGGCCAAAAGCTTTGCGTTGAAACAACAACCGTCCTTAGTTGGACAATCCTTCCAAAAGCAAAATAAGAAGAGAAAGAGATTTGAGAAGAAAATTGGGCTATCGAAAAAGAGAAAAATTGCTAGAGTGACTTAA 1818 0.4054 MGMKKSEKGSKKVMENKNEKKDVGNAASNATIGNDSVFASCSFSSLGLHPSLCDELREKLGFEVPTLVQAQAIPVILAGRHALINAATGTGKTVAYLAPLIHHLQNYDTRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTNVWFSXRILELGFGQDIQEILDLLGSRKAANDYKESTVPRNSEFQRQNLLFSATLNEKVNHLAKISLHNPVMIGLEGKTRKPVSTIESIDSSESDEDDEVKYSSKMPTAVDYKIPRQLIQRYVKVPCGSRLAVLLSILKHLFERDTSQKVVVFFSTCDAVDFHHSLLSEFHFSTDPQTKERVIQMFLGCQTFRLHGNMEHEDRRSTFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLAEYPLLKVLDNFTLHGQNKHVKKSVFIDLHPWVLCLQKALESFIISKPKMDELARKGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQNKKRKRFEKKIGLSKKRKIARVT 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03076 606 Pfam DEAD/DEAH box helicase 67 252 IPR011545 GO:0003676|GO:0005524
Arst3g03076 606 MobiDBLite consensus disorder prediction 1 22 - -
Arst3g03076 606 SMART ultradead3 61 280 IPR014001 -
Arst3g03076 606 MobiDBLite consensus disorder prediction 1 27 - -
Arst3g03076 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 328 497 IPR001650 -
Arst3g03076 606 CDD DEADc_DDX31 52 265 - -
Arst3g03076 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 264 IPR014001 -
Arst3g03076 606 Gene3D - 3 267 IPR027417 -
Arst3g03076 606 SMART DUF4217_3 512 577 IPR025313 -
Arst3g03076 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 41 70 IPR014014 GO:0003724
Arst3g03076 606 SMART helicmild6 368 450 IPR001650 -
Arst3g03076 606 Pfam Domain of unknown function (DUF4217) 514 574 IPR025313 -
Arst3g03076 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 471 IPR027417 -
Arst3g03076 606 PANTHER RNA HELICASE 22 529 - -
Arst3g03076 606 CDD SF2_C_DEAD 309 459 - -
Arst3g03076 606 Pfam Helicase conserved C-terminal domain 327 450 IPR001650 -
Arst3g03076 606 Gene3D - 319 603 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03076 Arst-Chr3 51700382 51707445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03076 34 482 Eukaryotic Initiation Factors Gene Family AT3G19760 24.558 4.56e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03076 K14806 - gmx:100805157 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03076 3 51700382 51707445 Arst3g03076 3 51700382 51707445 ECH