LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g02985	ATGGGAAGAAGCCCTTGTTGCTCAAAGGAGGGTTTGAACCGCGGTGCCTGGACAGCTCAAGAAGACAAAATCCTCAGAGATTATATCAGTCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTCAAAGAGCAGGGTTGAAACGTTGTGGGAAAAGTTGCAGGCTTCGATGGTTAAATTATCTGAGGCCAGATATTAAAAGAGGAAACATATCAGAAGATGAAGAAGAACTTATCATAAGACTTCACAAGCTACTTGGAAACAGATGGTCACTTATAGCCGGGAGGCTTCCAGGAAGAACAGACAATGAGATCAAGAATTATTGGAACACAAATTTAGGCAAAAGAGTTAGAGATCTTCAAACAATAAGCAGTGCATCTTCTCAGCAACCCAATGAAACAAATAACAACATTCAGAAACCAACAACAATGCCTCCTACAACCAATAAAGTGGTCTCCACAACCACTCCCTCTCTGTCACCGTTAAACGATTCACATTCTCTTCTCGTCCGTACAAAAGCTTCTAAGTGCTCTAAGTCATTATTCTTGGATCATTCATCAACAACAACAACTTCACTGCAGCAGAACAAGACTTCTAGTAATAATAATAATGACAATAGCCACGAACTCGATGAAACCGCCGCCGATCATGTTTTGCTGCCACCGCCGGGGTTGTTGCTTCCGAGCAACGGTGACAACAACAACACCATGGTGATGATGATGATGGAGATGGGTACCAATTCAGAAGAATACAAAGAGATCTCGACAACAGAATTGCTCTTGGATTTTGACGTTGGCGATATTTGCTTGCATTCTCTTCTGAACTCGGATTTCGAGGATATATGCGATTTCGGTTACAACAACAGTAACAGTAACTGCGAGGATCTGTTTGGATTCTCACCGCCGGAGCAGATGCAGCTGGATTCTTCTGATGAAGTTCTAAAGGAAGCCACCGTACCAAGCAACTTCCCTGACGAAACAAATAATATTGTACAAAACATACAGTTTCTGTGA	1011	0.4253	MGRSPCCSKEGLNRGAWTAQEDKILRDYISLHGQGKWRNLPQRAGLKRCGKSCRLRWLNYLRPDIKRGNISEDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKRVRDLQTISSASSQQPNETNNNIQKPTTMPPTTNKVVSTTTPSLSPLNDSHSLLVRTKASKCSKSLFLDHSSTTTTSLQQNKTSSNNNNDNSHELDETAADHVLLPPPGLLLPSNGDNNNTMVMMMMEMGTNSEEYKEISTTELLLDFDVGDICLHSLLNSDFEDICDFGYNNSNSNCEDLFGFSPPEQMQLDSSDEVLKEATVPSNFPDETNNIVQNIQFL	336

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g02985	336	Gene3D	-	70	142	-	-
	Arst3g02985	336	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Arst3g02985	336	FunFam	Transcription factor TT2	70	140	-	-
	Arst3g02985	336	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Arst3g02985	336	MobiDBLite	consensus disorder prediction	186	207	-	-
	Arst3g02985	336	CDD	SANT	16	61	IPR001005	-
	Arst3g02985	336	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Arst3g02985	336	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Arst3g02985	336	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	216	-	-
	Arst3g02985	336	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Arst3g02985	336	MobiDBLite	consensus disorder prediction	186	208	-	-
	Arst3g02985	336	Gene3D	-	14	66	-	-
	Arst3g02985	336	FunFam	MYB-related transcription factor	13	66	-	-
	Arst3g02985	336	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Arst3g02985	336	MobiDBLite	consensus disorder prediction	123	163	-	-
	Arst3g02985	336	CDD	SANT	71	112	IPR001005	-
	Arst3g02985	336	SMART	sant	13	63	IPR001005	-
	Arst3g02985	336	SMART	sant	66	114	IPR001005	-
	Arst3g02985	336	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g02985	Arst-Chr3	45760374	45762968	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g02985	1	167	MYB Transcription Factor Family	AT4G38620	54.651	1.49e-62	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Arst3g02985		Myb_DNA-binding	1.9e-14	CL0123