Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02972 ATGTCGGTGAATCTAACGGCAAACGCGATTCCGTCAATAATAGGCGGCGACGTGAACTCGAAACCGCTGGTTCAGGTTCTCGATTTGTCGCTGATCTCAAGCAGTAGCAACTCGCAGCAGCAGCGGTACCGCATGTTGCTATCCGACGCCGTTTCGTCTCACCAAGCCATGCTCGCACTTCAGCTCCTCGAGTACATTTGTAGCCCTCTCCAAAACCGCAAGATTATTGTAGTACTCAACATGGAAACTATAATCCCAGATTGCGAGATCATTGGGAATCCAAAACCGTTTGGGGAATCTAATTTACCAACTCAGAAAACATCACCTGATAAAGTTGTGCAGACATCATCCAGGGGTCATAATAATAATCAACAACAGACTTCTCAAACAGGTCATGCTGCACAGAGTTTCCGGCCAATAGTTCAACCTGCATATCAGCCACCTCCAGTTTACAAAAACCGTGGTGCTATTGTGAAAAATGAGGCACCAGCACGCATCATTCCCATAGCAGCTTTAAATCCTTACCAAGGTCGTTGGGCAATCAAGGCAAGGGTAACCGCAAAAGGGGATCTGCGCCGCTACAATAATGCTCGTGGAGATGGGAAAGTTTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACCTGCTTTAATGCTGTTGTAGATCGTTTCTACAATGCAATTCAAGTTGGTAAAGTTTACACAATATCCAAAGGTAGCTTGAAACCTGCGCAGAAAAATTTTAACCATTTGAAGAATGATTGGGAAATTGTATTGGATTCAAATTCAAATGTTGAACTTTGTCCGGATGAAGATGATTCTATTCCTAAACAGCAATTCTCCTTCAGGCCAATAATTGACCTTGAGAATGTTGACAATAATGGCATTCTTGATGTTATTGGGGTTGTGATATCTGTGAATCCTTCGGTTCCCATCTTGAGGAAGAATGGGATGGAAACTCAGAGAAGAATTTTGAATATAAAGGACTCCTCAGGCAGGAGTGTCGAGTTAACCCTTTGGGGCGAATTCTGCAACAGGGAAGGACAAAAGCTGCAAGAGATGGCTGATGCTGGGTCCTTCCCCATTGTGGCAGTCAAGGCAGGGAAGGTTAACGACTTCAGTGGAAAATCTATTGGTACTATTTCTACTACACAGCTTTCCATAAACCCGGACTTGCCTGAGGCTCATACCTTGAGAGAATGGTTTGATAGAGTGGGAAAGGATTCAGTTTCTCGATCCATTTCTAAGGATGTTTTGCCAGGAGGACCAAAGAATGAGATACGTAAAACTGTGTCTCAGATCAAGGATGAAGGCCTGGGGCGGTCTGATAAGCCAGACTGGATAACAGTGAGGGCAACCGTATCATTCATCAAGACAGATACGTTTTGTTACACAGCTTGCCCTCTGATGGTTGGAGACCGACAGTGCAGTAAGAAAGTGACCAGGGTAGGAGACGCAAGATGGCAGTGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGGTACCTTCTTCAAGCTCAAATTGTGGATCATACAGGAATAACTTGGGTAACTGCTTTTCAGGAAGCAGGGGAAGAGATTATGGAGTACCCAGCGAAAGAGCTGTACTTGTTGAAGTATGAAGAGCAGGATGATGACAAGTTCGGGAAAATAATCAAGAGTAGCCTCTTCAACCATTTTGTGTTTAGGCTTAAAATCAAAGAGGAATTGTATGGTGATGAACAGAGGGTTAAGGTAACAGTAGTCAAGGCAGATAAAGTTAATTACTCTTCAGAGAGTAGATACATGCTTGAATCGATTTCCAAGTTTTGTAGGCAGTAA 1839 0.4367 MSVNLTANAIPSIIGGDVNSKPLVQVLDLSLISSSSNSQQQRYRMLLSDAVSSHQAMLAXLQLLEYICSPLQNRKIIVVLNMETIIPDCEIIGNPKPFGESNLPTQKTSPDKVVQTSSRGHNNNQQQTSQTGHAAQSFRPIVQPAYQPPPVYKNRGAIVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNAIQVGKVYTISKGSLKPAQKNFNHLKNDWEIVLDSNSNVELCPDEDDSIPKQQFSFRPIIDLENVDNNGILDVIGVVISVNPSVPILRKNGMETQRRILNIKDSSGRSVELTLWGEFCNREGQKLQEMADAGSFPIVAVKAGKVNDFSGKSIGTISTTQLSINPDLPEAHTLREWFDRVGKDSVSRSISKDVLPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATVSFIKTDTFCYTACPLMVGDRQCSKKVTRVGDARWQCDRCNQEFEECDYRYLLQAQIVDHTGITWVTAFQEAGEEIMEYPAKELYLLKYEEQDDDKFGKIIKSSLFNHFVFRLKIKEELYGDEQRVKVTVVKADKVNYSSESRYMLESISKFCRQ 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02972 613 FunFam Replication protein A subunit 166 275 - -
Arst3g02972 613 PANTHER REPLICATION FACTOR A 1, RFA1 180 588 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Arst3g02972 613 SUPERFAMILY Nucleic acid-binding proteins 433 610 IPR012340 -
Arst3g02972 613 CDD RPA1_DBD_A 169 272 - -
Arst3g02972 613 Gene3D - 166 276 IPR012340 -
Arst3g02972 613 Pfam Replication factor-A protein 1, N-terminal domain 5 59 IPR007199 GO:0003677|GO:0005634|GO:0006260
Arst3g02972 613 Pfam OB-fold nucleic acid binding domain 181 253 IPR004365 GO:0003676
Arst3g02972 613 CDD RPA1_DBD_C 436 609 IPR047192 -
Arst3g02972 613 Pfam Replication factor-A C terminal domain 452 602 IPR013955 -
Arst3g02972 613 SUPERFAMILY Nucleic acid-binding proteins 166 280 IPR012340 -
Arst3g02972 613 NCBIfam replication factor-a protein 1 (rpa1) 4 609 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Arst3g02972 613 Pfam Replication protein A OB domain 290 394 IPR031657 -
Arst3g02972 613 MobiDBLite consensus disorder prediction 96 140 - -
Arst3g02972 613 CDD RPA1_DBD_B 301 408 - -
Arst3g02972 613 Gene3D - 419 611 IPR012340 -
Arst3g02972 613 FunFam Replication protein A subunit 279 418 - -
Arst3g02972 613 Gene3D - 3 99 IPR012340 -
Arst3g02972 613 SUPERFAMILY Nucleic acid-binding proteins 1 94 IPR012340 -
Arst3g02972 613 FunFam Replication protein A subunit 419 610 - -
Arst3g02972 613 Gene3D - 279 418 IPR012340 -
Arst3g02972 613 SUPERFAMILY Nucleic acid-binding proteins 284 410 IPR012340 -
Arst3g02972 613 MobiDBLite consensus disorder prediction 99 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02972 Arst-Chr3 44836444 44839313 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02972 26 605 Core DNA Replication Machinery Family AT2G06510 66.071 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02972 K07466 - gmx:100792409 990.334