Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02966 ATGAAACCGTTTCTCTCGCTCAATTATCCGGATACAGCATTCGATTGTGCACAAATTGAATGCGATTACTCGATGAATCAACCCCAAATGTTGCCCCAGATGCTAGGATTGCAATCCACTAGAGTTGCTTTACCACTTGATCTTGCCGAGGAAGGCCCCGTTTATGTCAATGCAAAACAATACCACGGTATACTGAGAAGGCGTCAGTCGCGAGCAAAGCTTGAGGCTCAGAACAAACTAATAAAAAATCGTAAGCCATATCTACACGAGTCTCGCCATCGCCATGCTTTGAATAGGGTCAGGGGTTCCGGGGGACGATTCCTGAGCACCAAGCAGTTTGAACAATCTAATGCTGAAGTTGCCACCGGCGCGCATTCTAGCTCAGACCCCAGCAAGGATGCATCCAAGGTTGAAAGTCATCTCTTGAGAACAGCTGGCAATGCATCTTCAATCACAACCTGCTCGGATCGGACGTCCTTGTCAAGCAACAGTGTTAGCAGGCAGCCGGAAGCGCAGTTGTTCCTGGCAGGCCCTGCAAACATGGGCCGAGCTCCAGTGGTCCGGTGA 567 0.4991 MKPFLSLNYPDTAFDCAQIECDYSMNQPQMLPQMLGLQSTRVALPLDLAEEGPVYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALNRVRGSGGRFLSTKQFEQSNAEVATGAHSSSDPSKDASKVESHLLRTAGNASSITTCSDRTSLSSNSVSRQPEAQLFLAGPANMGRAPVVR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02966 188 MobiDBLite consensus disorder prediction 142 167 - -
Arst3g02966 188 SMART cbf3 49 110 IPR001289 GO:0003700|GO:0006355
Arst3g02966 188 ProSitePatterns NF-YA/HAP2 subunit signature. 55 75 IPR018362 GO:0003677|GO:0016602
Arst3g02966 188 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 53 107 IPR001289 GO:0003700|GO:0006355
Arst3g02966 188 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 23 166 IPR001289 GO:0003700|GO:0006355
Arst3g02966 188 Gene3D - 50 112 - -
Arst3g02966 188 PRINTS CCAAT-binding transcription factor subunit B signature 53 75 IPR001289 GO:0003700|GO:0006355
Arst3g02966 188 PRINTS CCAAT-binding transcription factor subunit B signature 84 107 IPR001289 GO:0003700|GO:0006355
Arst3g02966 188 MobiDBLite consensus disorder prediction 115 167 - -
Arst3g02966 188 ProSiteProfiles NF-YA/HAP2 family profile. 50 110 IPR001289 GO:0003700|GO:0006355
Arst3g02966 188 MobiDBLite consensus disorder prediction 115 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02966 Arst-Chr3 44461504 44464717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02966 28 116 CCAAT-HAP2 Transcription Factor Family AT1G54160 68.132 2.14e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Arst3g02966 CBFB_NFYA 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02966 K08064 - gmx:100793856 244.973