Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02881 ATGAGAGTCAATGTTCTAGAAGAGATTCATTCATTCCTGGGAAGGCGTAATATCTTCAGCATGAAGAACACAAATGTTATTGCTGCATTTACCCAAGAAACATGTGAAAGTGTATACTTGTACATATTACTTGCTCTCGTTTCAAGTTACATCGAGATAACATCTCCAAACACCAAACTCCTCTTCCTCTCCCTCCCTTCATTCAAAACCCTCACTCACTCTNNNAACCCCTCCACCATCCTCCACCTCACTCCTTCTTCCACTTCCACCTCAACTCCCACCACCACCCGCCGCAAAACCTTCACCGTACGCGCCGCGCGTGGAAAATTCGAGCGTAAGAAGCCACACGTCAACATCGGAACCATCGGCCACGTCGACCACGGCAAAACCACCCTCACCGCCGCCCTTACCATGGCTCTCGCCGCCCTCGGAAACAGCGCTCCCAAGAAGTACGACGAGATCGACGCCGCGCCGGAGGAAAGGGCGCGTGGAATCACCATCAACACTGCGACGGTGGAGTACGAGACGGAGAACCGCCACTATGCACACGTGGACTGCCCTGGACACGCTGATTACGTCAAGAACATGATCACCGGAGCTGCGCAGATGGACGGCGCTATATTGGTGGTTTCCGGTGCCGACGGACCCATGCCGCAGACTAAGGAGCACATCCTTCTTGCTAAGCAAGTTGGTGTTCCCAACATGGTTGTCTTTCTCAACAAGCAAGACCAGGTGGATGATGAGGAGCTTTTGCAGCTTGTGGAGCTTGAGGTTCGTGAGCTTCTGTCCTCATATGAGTTCCCTGGTGATGACATTCCTATTATTTCCGGTTCTGCTCTGTTGGCCTTGGAAGCTTTGATGGCAAATCCAGCAATCAAGCGTGGTGATAATGAGTGGGTGGATAAGATTTATCAACTTATGGATTCTGTGGATAGTTACATTCCCATCCCTCAGCGCCAAACTGATCTACCCTTCTTACTTGCGGTGGAAGATGTGTTTTCAATCACTGGTCGTGGAACGGTGGCCACAGGGCGTGTTGAGAGGGGAACCATTAAGGTTGGAGATACGGTTGACCTTGTTGGTATCAGGGAAACTAGGAACACTACTGTGACTGGTGTGGAAATGTTCCAGAAGATTCTCGATGAGGCCATGGCTGGGGACAACGTGGGATTGTTGCTTAGGGGTATTCAGAAGGTCGATATTCAGAGAGGGATGGTTTTGGCCAAGCCTGGAACCATCACACCGCACACAAAGTTCAGCGCAATCGTCTATGTTTTGAAGAAGGAAGAAGGAGGGAGGCACTCACCTTTCTTTGCCGGGTACAGGCCTCAGTTCTACATGAGGACCACCGATGTCACTGGCAAGGTTACTCAAATCATGAATGACAAGGATGAGGAATCAAAGATGGTTATGCCTGGTGACCGTGTTAAGATGGTGGTTGAACTTATCCAGCCCGTGGCTTGTGAACAGGGAATGAGGTTCGCTATTAGAGAAGGAGGGAAGACCGTCGGAGCCGGTGTTATCCAATCTATAATTGAGTAA 1542 0.5019 MRVNVLEEIHSFLGRRNIFSMKNTNVIAAFTQETCESVYLYILLALVSSYIEITSPNTKLLFLSLPSFKTLTHSXNPSTILHLTPSSTSTSTPTTTRRKTFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIISGSALLALEALMANPAIKRGDNEWVDKIYQLMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGDTVDLVGIRETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTQIMNDKDEESKMVMPGDRVKMVVELIQPVACEQGMRFAIREGGKTVGAGVIQSIIE 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02881 513 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 114 318 IPR000795 GO:0003924|GO:0005525
Arst3g02881 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 340 IPR027417 -
Arst3g02881 513 FunFam Elongation factor Tu 105 317 - -
Arst3g02881 513 Pfam Elongation factor Tu domain 2 339 407 IPR004161 GO:0005525
Arst3g02881 513 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 412 512 IPR009001 -
Arst3g02881 513 CDD EFTU_III 414 508 - -
Arst3g02881 513 Gene3D Translation factors 452 512 - -
Arst3g02881 513 Gene3D - 106 317 IPR027417 -
Arst3g02881 513 Pfam Elongation factor Tu GTP binding domain 114 315 IPR000795 GO:0003924|GO:0005525
Arst3g02881 513 FunFam Elongation factor Tu 452 512 - -
Arst3g02881 513 FunFam Elongation factor Tu 320 448 - -
Arst3g02881 513 CDD EF_Tu 115 317 IPR041709 -
Arst3g02881 513 SUPERFAMILY Translation proteins 319 415 IPR009000 -
Arst3g02881 513 Gene3D Translation factors 320 448 - -
Arst3g02881 513 NCBIfam small GTP-binding protein domain 117 249 IPR005225 GO:0005525
Arst3g02881 513 CDD EFTU_II 325 411 IPR033720 -
Arst3g02881 513 PRINTS GTP-binding elongation factor signature 118 131 IPR000795 GO:0003924|GO:0005525
Arst3g02881 513 PRINTS GTP-binding elongation factor signature 162 170 IPR000795 GO:0003924|GO:0005525
Arst3g02881 513 PRINTS GTP-binding elongation factor signature 198 209 IPR000795 GO:0003924|GO:0005525
Arst3g02881 513 PRINTS GTP-binding elongation factor signature 235 244 IPR000795 GO:0003924|GO:0005525
Arst3g02881 513 PRINTS GTP-binding elongation factor signature 182 192 IPR000795 GO:0003924|GO:0005525
Arst3g02881 513 Pfam Elongation factor Tu C-terminal domain 412 511 IPR004160 -
Arst3g02881 513 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 155 170 IPR031157 -
Arst3g02881 513 Hamap Elongation factor Tu [tuf]. 105 513 IPR004541 GO:0003746|GO:0005525|GO:0006414
Arst3g02881 513 PANTHER ELONGATION FACTOR TU-RELATED 86 512 - -
Arst3g02881 513 NCBIfam elongation factor Tu 106 513 IPR004541 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02881 Arst-Chr3 42447955 42452058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02881 112 511 Eukaryotic Initiation Factors Gene Family AT5G60390 30.269 9.35e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02881 K02358 - rcu:8278277 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g02881 3 42447955 42452058 Arst3g02881 3 42447955 42452058 ECH
Arst1g02279 1 63090747 63092845 Arst3g02881 3 42447955 42452058 PCT