Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02818 ATGTCTATCATCACTGGCTTCAAATCCCTAACTACCATGGCAGAATCATGCCTTCTCTCTCCTCCTTCCTCTCTCTTCCATTCCAAACACATCACCCATTCAAATTCCAAACCCCACCACCACACTCTCTTCAAACTCGCTTCTCCATTCCCTTCCCTCTCTCTTTCTCTCACCGCAAGGCGCCATCATCACGTGCTCACTCACGTGGCCCAAACCTCCGACTGGGCCCAGCAAGAGGAAGACAACACTTTCACCTTGGAACAGCAAGAAGCTGAAGAACCTGCACTTTCCGATTGGGAACCCAGCGCTGAAATCGTAGGCGAAGCTGAAGTTGCTGAAGCCGAAGACGGAGACGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGGAGGGGATTTTGTTGAGCCACCAGAGGAGGCGAAAATCTTCGTTGGAAACTTGCCTTATGACGTTGATAGCCAGAAACTCGCCATGCTTTTCGAGCAAGCTGGAACCGTTGAAATTGCCGAGGTTATTTACAACAGGGACACTGACCAAAGTCGCGGGTTTGGCTTCGTGACAATGAGTACTGTCGAGGAAGCTGAGGCTGCTGTGGATAAGTTCAACCGCTATGATTTAGGTGGAAGACTGTTGACTGTTAACAAGGCTTCTCCAAGAGGAGAGCGACCTGAACGCCCACCCCGTTCATTCGAACAGGCTTTTAGAATCTATGTTGGTAACTTGCCTTGGGATGTTGACAATGGTCGCCTGGAGCAGATTTTCAGCGAACACGGTAAGGTTGTGAATGCTCGCGTAGTGTATGACAGAGAAACTGGACGATCACGCGGCTTTGGTTTTGTCACAATGACTGACGAGAGTGAAATGAACGATGCAATTGCTGCTCTTGATGGCCAGAGTTTGGATGGAAGGGCAATAAGAGTGAATGTTGCTGAGGACAGACCCAGACGCTCTTTTTGA 957 0.4911 MSIITGFKSLTTMAESCLLSPPSSLFHSKHITHSNSKPHHHTLFKLASPFPSLSLSLTARRHHHVLTHVAQTSDWAQQEEDNTFTLEQQEAEEPALSDWEPSAEIVGEAEVAEAEDGDEEEEEEEGEEEGGDFVEPPEEAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEAAVDKFNRYDLGGRLLTVNKASPRGERPERPPRSFEQAFRIYVGNLPWDVDNGRLEQIFSEHGKVVNARVVYDRETGRSRGFGFVTMTDESEMNDAIAALDGQSLDGRAIRVNVAEDRPRRSF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02818 318 MobiDBLite consensus disorder prediction 110 134 - -
Arst3g02818 318 FunFam 31 kDa ribonucleoprotein, chloroplastic 70 223 - -
Arst3g02818 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Arst3g02818 318 PANTHER OS02G0815200 PROTEIN 28 316 - -
Arst3g02818 318 MobiDBLite consensus disorder prediction 110 137 - -
Arst3g02818 318 SUPERFAMILY RNA-binding domain, RBD 227 316 IPR035979 GO:0003676
Arst3g02818 318 FunFam 31 kDa ribonucleoprotein, chloroplastic 224 318 - -
Arst3g02818 318 SMART rrm1_1 141 214 IPR000504 GO:0003723
Arst3g02818 318 SMART rrm1_1 235 308 IPR000504 GO:0003723
Arst3g02818 318 CDD RRM2_NsCP33_like 235 310 - -
Arst3g02818 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 312 IPR000504 GO:0003723
Arst3g02818 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 211 IPR000504 GO:0003723
Arst3g02818 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 306 IPR000504 GO:0003723
Arst3g02818 318 CDD RRM1_PSRP2_like 141 220 - -
Arst3g02818 318 SUPERFAMILY RNA-binding domain, RBD 136 229 IPR035979 GO:0003676
Arst3g02818 318 Gene3D - 68 222 IPR012677 -
Arst3g02818 318 Gene3D - 223 317 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02818 Arst-Chr3 42161424 42164005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02818 138 316 Eukaryotic Initiation Factors Gene Family AT3G16380 36.458 1.03e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02818 - - adu:107478884 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g02128 1 50732599 50736242 Arst3g02818 3 42161424 42164005 ECH
Arst3g02818 3 42161424 42164005 Arst3g02818 3 42161424 42164005 ECH
Arst1g02128 1 50732599 50736242 Arst3g02818 3 42161424 42164005 PCT