Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02804 ATGATGATATCAAGAAGCATTCTATTCTCTTTGGTTTTCTTGGTTTTCTCTTTTCTCATCCCTACCTTCATTTCCTCTTCCCCTGTCCAAGACCCTGAATTGGTAGTTCAAGAGGTGAATAGGCAAATCAATGCCTCCATTGCTAGGAGGAGCTTGTTAGCTAGTGATAGGAGAAACTTAGGGTACCTTTCATGTGGAAGTGGCAACCCCATTGATGATTGTTGGAGGTGTGATCCTAATTGGGAACAGAACAGACAGAAGCTAGCCGACTGCGCAATTGGGTTCGGAAAGAACGCAATTGGTGGTCGAGATGGTAAGATTTACGTGGTAGATGATTCTGGAAATGATGATCCAGTAAACCCTAAATCCGGAACCCTACGCCATGCAGTGATTCAGGATGAGCCGTTATGGATTATATTCGCTAAGGATATGGTAATCACACTGAAAGAAGAATTAATTATGAATTCTTACAAGACAATTGATGGAAGAGGAGCTAGTGTACACATTGCTAATGGTCCATGCATAACTATACAATATGTGACAAATGTGATTATACATGGAATTAACATACATGATTGTAAGCAAGGGGGGAATGCTATGGTGCGTGACTCTCCTAGGCACTACGGGTGGAGGACCGTATCGGACGGCGATGGCGTGTCGATCTTCGGTGGGGCCCACATTTGGGTGGACCATTGTTCATTGTCCAATTGCAATGATGGGTTGATTGATGCAATTCATGGGTCCACAGCAATCACAATATCTAACAATTACATGACACACCATGATAAGGTTATGTTGCTTGGTCATAGTGATGAATATACTCAAGACAAGAACATGCAAGTCACTATTGCTTTCAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGTAGGCTTGGATACTTCCACGTGGTGAATAATGACTATACCCATTGGGAGATGTATGCTATTGGAGGAAGTGCTAACCCTACCATTAATAGCCAAGGAAATAGATTTGTTGCACCCAATGATAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCAGCAGAGAGTGAATGGAAGAATTGGAATTGGAGATCAGAAGGGGACATGCTTGTTAATGGTGCATTCTTCACAGCTTCTGGTGCTGGTGCTTCTTCAAGCTATGCTAGGGCTTCTAGCCTCAGTGCTAGACCCTCTTCTCTTGTTGCTTCTATTACTACTTCTTCTGGTGCCCTTCTTTGCAAGAAAGGTTCTCCATGCTGA 1254 0.4314 MMISRSILFSLVFLVFSFLIPTFISSSPVQDPELVVQEVNRQINASIARRSLLASDRRNLGYLSCGSGNPIDDCWRCDPNWEQNRQKLADCAIGFGKNAIGGRDGKIYVVDDSGNDDPVNPKSGTLRHAVIQDEPLWIIFAKDMVITLKEELIMNSYKTIDGRGASVHIANGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGAHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDEYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAAESEWKNWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVASITTSSGALLCKKGSPC 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02804 417 SUPERFAMILY Pectin lyase-like 69 408 IPR011050 -
Arst3g02804 417 FunFam Pectate lyase 68 410 - -
Arst3g02804 417 SMART amb_all 143 340 IPR002022 -
Arst3g02804 417 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Arst3g02804 417 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Arst3g02804 417 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Arst3g02804 417 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Arst3g02804 417 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Arst3g02804 417 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Arst3g02804 417 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Arst3g02804 417 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Arst3g02804 417 Gene3D - 68 410 IPR012334 -
Arst3g02804 417 PANTHER PECTATE LYASE 18-RELATED 29 415 IPR045032 GO:0030570
Arst3g02804 417 Pfam Pectate lyase 150 334 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02804 Arst-Chr3 42064254 42068281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02804 1 417 Polysaccharide Lyase AT5G63180 77.327 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02804 K01728 - gmx:100787082 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g02804 3 42064254 42068281 Arst3g02804 3 42064254 42068281 ECH
Arst1g02140 1 51714933 51717251 Arst3g02804 3 42064254 42068281 ECH
Arst10g01000 10 9716089 9719116 Arst3g02804 3 42064254 42068281 ECH
Arst3g02804 3 42064254 42068281 Arst1g02140 1 51714933 51717251 ECH
Arst1g02140 1 51714933 51717251 Arst3g02804 3 42064254 42068281 PCT