Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02788 ATGGGGGCGGCGGAGACGGAGTTGTTAACGGCGGCGGAGCAGCCACGAAAGGCACCGCGGCCAGGTAAAGGAGGATACTCAGGTCACGGCCTGAGCGAAGAAGAAGCGCGCGTGCGCGCAATCTCTGAGATCGTGAGTTCCATGGTTGAGCTCTCGCGTAAGGGACAGAACGTCGACCTCAACGCGCTCAAGTCTAGCGCGTGTCGCAAGTATGGCCTCGCACGCGCTCCGAAGCTCGTGGAGATGATTGCTGCACTCCCTGACTCCGAGCGCGATGCGCTCCTCCCTAAGCTTAGGGCGAAACCGGTTCGAACCGCCTCTGGAATCGCGGTGGTGGCGGTTATGTCGAAGCCGCATCGGTGCCCGCACATCGCGACCACCGGAAACATATGCGTTTACTGTCCCGGAGGACCTGACTCGGATTTTGAGTACAGTACTCAGTCTTACACTGGTTATGAACCGACTAGTATGCGTGCAATTCGAGCGAGGTATAACCCATATGTCCAAGCAAGAAGCAGGATAGATCAGCTTAAGCGTTTGGGTCACAGTGTAGACAAGGTTGAGTTCATTTTAATGGGTGGTACTTTCATGTNNNNNTACTTCATAAGGAATCTTCATGATGCTTTGTCTGGACATACTTCTGCCAATGTAGAAGAAGCGGTTGCATACTCTGAGCACAGTGCAACTAAGTGTATCGGCATGACAATTGAGACAAGGCCAGATTATTGTCTTGGGCCTCACTTGCGGCAAATGCTTTCCTATGGTTGTACACGGTTGGAAATTGGAGTCCAAAGCACCTATGAGGATGTTGCTCGAGACACTAACAGAGGGCATACAGTAGCTGCTGTGGCTGATTGTTTTTCCTTGGCAAAAGATGCTGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCTAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGGGAGTTTTTTGAGAGCCCCTCATTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATACGTGGAACTGGACTTTATGAGCTCTGGAAAACTGGGAGGTATAGAAATTATCCACCTGAGCAACTTGTGGATATCATAGCTAGGATTCTTGCTATGGTGCCACCTTGGACACGTGTTTATAGAGTTCAACGGGATATTCCCATGCCTCTGGTTACATCTGGGGTTGAGAAAGGAAATCTGAGAGAGCTAGCATTAGCTCGAATGGAAGACCTGGGATTGAAATGTCGTGACGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCACCACCAAATTAGTCCCTCTAATTTTATTGCTGGCATCCTTACGTCATACACCACACATTCGAGTCTTTTGTACTCTCTGAAACAGGATATCCTTGTTGGTCTTCTACGACTGCGAAAATGTGGCCGAAACGTTACTTGCCCAGAGCTAATGGGCAAGTGTTCTATTGTTCGTGAACTTCATGTTTATGGAACTGCTGTACCAGTTCATGGGAGGGATGCTGACAAGCTACAACACCAGGGTTATGGTACGCTTCTAATGGAGGAGGCAGAGCGTATTGCTTTAAGAGAACACCGATCAACAAAAATAGCTGTAATTTCAGGGGTTGGCACCCGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGGCCTTACATGGTTAAATATCTAGTATAA 1680 0.4827 MGAAETELLTAAEQPRKAPRPGKGGYSGHGLSEEEARVRAISEIVSSMVELSRKGQNVDLNALKSSACRKYGLARAPKLVEMIAALPDSERDALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMXXYFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFSLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQISPSNFIAGILTSYTTHSSLLYSLKQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIALREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02788 559 SFLD Radical SAM 59 558 IPR007197 GO:0003824|GO:0051536
Arst3g02788 559 SFLD Radical SAM 59 558 IPR007197 GO:0003824|GO:0051536
Arst3g02788 559 Gene3D - 424 557 - -
Arst3g02788 559 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 412 559 IPR000182 GO:0016747
Arst3g02788 559 Pfam Radical SAM superfamily 129 311 IPR007197 GO:0003824|GO:0051536
Arst3g02788 559 Pfam Acetyltransferase (GNAT) family 451 547 IPR000182 GO:0016747
Arst3g02788 559 ProSiteProfiles Radical SAM core domain profile. 104 388 IPR007197 GO:0003824|GO:0051536
Arst3g02788 559 Pfam Radical_SAM C-terminal domain 329 408 IPR032432 -
Arst3g02788 559 MobiDBLite consensus disorder prediction 1 31 - -
Arst3g02788 559 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 303 554 IPR016181 -
Arst3g02788 559 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 16 558 IPR039661 -
Arst3g02788 559 CDD Radical_SAM 118 359 - -
Arst3g02788 559 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 56 558 IPR034687 -
Arst3g02788 559 SFLD ELP3-like 59 558 IPR034687 -
Arst3g02788 559 SFLD ELP3-like 59 558 IPR034687 -
Arst3g02788 559 PIRSF HAT_Elp3 26 559 IPR034687 -
Arst3g02788 559 SMART MiaB 111 367 IPR006638 GO:0003824|GO:0051536
Arst3g02788 559 SUPERFAMILY Radical SAM enzymes 141 374 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Arst3g02788 Radical_SAM 3.2e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02788 K07739 - gmx:100818764 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g02788 3 41923188 41927002 Arst3g02788 3 41923188 41927002 ECH