Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02726 ATGATGGAAGGTGTGTTCTTCCTGCCAGAAGTCGCCAGAACCGGTTATCTTCGCTCTATAGTGCAGTCTGTTGGCTGCGCCTACATTTGTCTCTGGTCCTTTGATCCCACTTCTTCTCCTAATAATCGGTTGTTCTTCTTGGATGGTTTCTACAATAACGTCAGAAACAACCAACAAGCAAGCTCTTCATTGGGGAGTGTGGCGCAACAACTCTTTAATCAGTTCAGGACTTTAAGATTTGATGCAAATGATGACCGTATTCCTGGACTAGCTTTTAGGAACAACCGTCCGTACGTAGAGGTGCAGCAACCGGAACTTCTCAGACTCGCATGGACTCAAATACAAAAACAATTCTTTCAGGAAGCAAGGATTAAGACTGCTGTATTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAATTTGTCTCAGGCTGAAATTCAAACAGCACTTAGCAGTTTGTTCCAGGAAGATTTCTCTTCTGGTCGGCAAATAATGGATCATCAGAATAATCCACCCTCATCATCTTCATCTTCTTTGAGATCATTATCCACAACAGCTGGCAGCCCTGAATACTCCTCACTCCTATTCAACATTCCTCCGGCCGGAGCTACCGCGGGAGCAATAGTACCTAACACAATGTCTCCTTTGTCATCTAACACACAATCAGCATTGCTAACTAATTACGTATTCCCGAGTCATCACCAGGAGATCGAAAACGAGACACTAATGAGAGTGTTCCTGAACGCTATATCACCACAACAGCATCAAAACTTGCCTTATAACATCACTGTGGTGCACCCTGAGAGTAGCGCTTTCAAGAGGTACAGGACGGAACCGGAACCGGGACCGGAACGGGCGCCGGAGAGTTTGCGGAGTAGGCAAAGCCTTATGAAGAGATCGTTAGCGTTCTTTAGGAGCATCAATGCTATGAGAATAAGGGAACGGATTCAAGCCACTCGCCCCTCTAGCACACAGCTTCATCATATGATAGCTGAGAGAAGAAGGCGCGAGAAGCTCAACGATAATTTTCAGGCTCTTAGAGCATTGCTTCCTCCCGGAACTAAGAAAGACAAAGCGTCTATACTAACAACTGCAAAGGAGACACTGAGTTCATTGATGGCGGAAATTGAAAAGCTGAGGATAAGAAATCACGAGTTAGAATCACGTTTGCCTGAAAGCAGCAAAGAATCAAGCGCTGCCGATCAAGAAATTAGCAAAACTATGTTATTGGTGCCACCAAACGAGAGATTTCATGTTCAAATTTCAGATGTGCCACAATCATCATCATCATCATCGTCAGAAGAGAGAAGGGTGGATTTGCATGTCGCTTTGAGGGGGCAAATTTCTCAGATTGATGCGGTGATTCGGTTATTGGAGTTCTTGAAACTGGCTCAGAATGTGAGCTTGATTACCATGAGAACAAATACCAATAATGTTGGTCAAGGGAATAATAATTATATTAATCAACTAACATTCAGATTAAGGATTCTTGAGGGAAGTGAATGGGATGTTTCTGCCTTCCAGGAAGCAGTGAAAAGAGTTGTAGGTGATTTGGCACAGTTCCAAGTTGACCATTAG 1587 0.4392 MMEGVFFLPEVARTGYLRSIVQSVGCAYICLWSFDPTSSPNNRLFFLDGFYNNVRNNQQASSSLGSVAQQLFNQFRTLRFDANDDRIPGLAFRNNRPYVEVQQPELLRLAWTQIQKQFFQEARIKTAVFMGCNKGEIELGFLNLSQAEIQTALSSLFQEDFSSGRQIMDHQNNPPSSSSSSLRSLSTTAGSPEYSSLLFNIPPAGATAGAIVPNTMSPLSSNTQSALLTNYVFPSHHQEIENETLMRVFLNAISPQQHQNLPYNITVVHPESSAFKRYRTEPEPGPERAPESLRSRQSLMKRSLAFFRSINAMRIRERIQATRPSSTQLHHMIAERRRREKLNDNFQALRALLPPGTKKDKASILTTAKETLSSLMAEIEKLRIRNHELESRLPESSKESSAADQEISKTMLLVPPNERFHVQISDVPQSSSSSSSEERRVDLHVALRGQISQIDAVIRLLEFLKLAQNVSLITMRTNTNNVGQGNNNYINQLTFRLRILEGSEWDVSAFQEAVKRVVGDLAQFQVDH 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02726 528 Pfam Helix-loop-helix DNA-binding domain 330 375 IPR011598 GO:0046983
Arst3g02726 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 396 IPR036638 GO:0046983
Arst3g02726 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 326 375 IPR011598 GO:0046983
Arst3g02726 528 MobiDBLite consensus disorder prediction 166 187 - -
Arst3g02726 528 CDD bHLH_AtbHLH_like 331 383 IPR045239 -
Arst3g02726 528 SMART finulus 332 381 IPR011598 GO:0046983
Arst3g02726 528 Gene3D - 325 400 IPR036638 GO:0046983
Arst3g02726 528 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 112 519 IPR044658 -
Arst3g02726 528 Coils Coil 365 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02726 Arst-Chr3 41246580 41252211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02726 6 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.130 1.37e-101 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst3g02726 HLH 5.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02726 - - ahf:112790359 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g02726 3 41246580 41252211 Arst3g02726 3 41246580 41252211 ECH
Arst1g02727 1 89081880 89085345 Arst3g02726 3 41246580 41252211 PCT