Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02624 ATGACGACGCCGTTTTCGGCGGGGCTGAAGCACTTGGATGGAGGCGGAGGACTGGCGGTGCTCTCCAATTCCATCGACAAGGTTGATTCGTCCTCCACTTCCTCCTCGACGGCGCTCAGTGGCAGCGTCAAGTGCTCTAAGCTGGTAGACTCGCCCATTTTGATTTTCTTGTTCTTCCACAAGGCGATTCGGAACGAGCTAGACGCGCTGCACCGTCTCGCGATGGCATTCGCCACCGGCAACTCCTCCGATATCCAGCCTATCTCCCAGCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTCCAATGCCGAAGACGAGGTGATTTTTCCAGCCCTTGATATACGTGTGAAGAATGTTGCAAAGACATATTCTCTTGAACACAAAGGTGAAAACAATCTTTTTGATCATCTATTTGAGCTGCTAAATTCTTCCACCCACAACGATGAAAGTTTTGCTAGAGAGTTAGCATCCTGCACAGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCAAAGGAAGAGGAGCAGGTACTTCCTTTGCTTATTGAGAAGTTCTCTCTCGAGGAGCAGGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCCGTGAACATGATGACAGAATTTCTTCCATGGCTTTCAAGATCCATATCACCTGATGAACGACTGGATTTGCAGAATTGCTTAATCAAGATAGTTCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCAAGTGGATGGAAGGGAGAAGCAGTGTTAACACAGTTGACAGTTGTGTAAAACATTCTCAAGTTCAATCTAGTAGTAGCCCATCAACTGGAAAAAGGAAATATTCTGGATCTACCCTGGATGACTCTGATGCCATTGGATCACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATTAGAAAAGAGCTAAGTGAGATAGCAGTGGAGACCAGAAAGATACAATGTTCAGGGGATTTTACAAATCTATCCTCTTTTAATCAAAGATTGCAGTTCATTGCTGAAGTTTGTATATTTCATAGTATTGCTGAGGACAAAGTTATTTTTCCAGCAGTAGATGGAGAATTGTCATTTTTTCAGGAGCATGCTGAAGAAGAAAGCCAGTTTAATGACTTCCGGTGTTTGATTGAAGGTATTCAAAGTGAAGGAGCAACATCTAATTCAGAAGTTGAATTCTTTTCAAAGTTATGCTCACATGCTGATCATATAATGGAAACCATAGAGAGACATTTCCATAATGAAGAAGTTCAGGTCCTTCCACTTGCAAGAAAGCACTTTAGCTTTAAAAGGCAATGCGAACTTCTGTATCAAAGCTTGTGCATGATGCCTCTGAAATTGATTGAGCGCGTTCTTCCATGGTTGGTAGGATCATTAACTGCAGAAGAAACAAAGATGTTTCTGAGAAACATGCAGTTGGCAGCTCCAGAAATGGATTCTGCTATAGTTACACTCTTCTCTGGGTGGGCTTGCAAGGCTCGTATTGAAGGTCTATGTTTGTCTTCCGGTGCGTCAGGTTGCTGTCCTGTTCAAAGACTTTCTGATATTGAAGAAAACATTGCTTGGCCATCCTGCGCTTGTGGTTCCGCATCATCTGTAAGAGATTGTTTAGTATTAGACAAATCAGATGGGAACAGAAAGTCATTCAAGCGAAACCTATTAGAGTCCCACAACCATGGAGATATCACTGAAAATCCAGAGACTGAAAATGTCCAAAAACAATGTTTTGCTACTCGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAACAGTAACAATTTGGGGTTGAGTTCTATTTCTACAGCCAAGTCCTTGCGGTCCTTGTCTTTCAACTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTTGTATGGGAAACAGAAAGCAGCTCATCTGATGTTGGATCTGCACAAAGACCAATTGATACCATATTTAGTTTCCACAAAGCTATACGAAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTAATGGTGATGAGATAGTTCTTCGGCAATTTAGTGGAAGATTTCGTCTTTTATGGGGCTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTGGAGTCAAAAGAGGCACTTCATAATGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAACAATTATTTGAGGATATTTCCTGCGTTCTTTCTGAGCTTTCTATGCTTCACGAAGCCTTGCAGATGAACCATATGCCAGAGAACTTAAGTGAAAGTAATTTTAGAACATCTGATTCCAAGGGTAGTGAGAATATTAAAAAGTATAATGAACTCGCGACTAAGCTTCAAGGAATGTGCAAATCCATAAGGGTTACTCTGGATCATCATCTTTTCAGGGAGGAGTGTGAACTGTGGCCATTATTTGGGAAACATTTCACTGTAGAAGAACAGGACAAGATAGTGGGACGGATAATTGGAACAACTGGAGCTGAAGTTCTCCAATCAATGTTGCCATGGGTAACTTCCGCACTTACTCAAGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCAACTAAAAACACTATGTTCAATGAATGGCTCACTGAATGCTGGAAAGATAGTCCAGCACCTATAACACAGATAGAAACATCAGATCATAACACTTCTCGAAGAGGTGCTGAATATCAAGAAAGCTTGGACCATAATGATCAAATGTTCAAGCCTGGTTGGAAAGACATATTCCGGATGAACCAGAATGAACTTGAGTCAGAGATCCGAAAGGTTTATCGTGATTCAACTCTTGATCCAAGGAGAAAGGCATACCTTGTGCAGAATCTGATGACAAGTCGTTGGATAGCTGCTCAGCAGAAATCACTGAAAGCCATAACTGAAGTAGCATCTAATGGTGAACAAATAGAAGGGCAGTCACCATCATTTCGGAACCCTGATAAACATGTGTATGGGTGTGAGCACTATAAGAGAAATTGTAAGCTACGAGCTGCATGTTGTGGCAAGTTAGTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATACAGCCGATAGGGCCTAAATGCATGACACCTTCATGTAACGAACTTTCAATGGCAAAATACTATTGCAACATATGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAACATATGCCGTGTCGGACGAGGGCTTGGGATTGATTATTTCCATTGCATGAAATGCAATTGCTGCTTGGGCATAAGATCACAATCACATAAGTGCCTGGAAAAAGGCTTAGAAATGAATTGCCCAATTTGTTGTGATGATTTATTCACGTCAAGTGCTCCAGTTAGAGCTCTGCCTTGTGGCCATTATATGCATTCTGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCGATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCACTATTGGCTACTGAGGATCTTCCTGAAGAGTATAAGGACCGGTGTCAGGACATACTCTGCCATGACTGTGACAAAAAGGGCACTTCACGCTTCCATTGGTTATACCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTGATTAAGGGTGAGGAATCAAATTCCAGCTGCTCTTACTCTTATTAG 3717 0.4186 MTTPFSAGLKHLDGGGGLAVLSNSIDKVDSSSTSSSTALSGSVKCSKLVDSPILIFLFFHKAIRNELDALHRLAMAFATGNSSDIQPISQRYHFLSSMYRHHSNAEDEVIFPALDIRVKNVAKTYSLEHKGENNLFDHLFELLNSSTHNDESFARELASCTGALQTSVSQHMAKEEEQVLPLLIEKFSLEEQASLVWQFLCSIPVNMMTEFLPWLSRSISPDERLDLQNCLIKIVPEEKLLQKVIFKWMEGRSSVNTVDSCVKHSQVQSSSSPSTGKRKYSGSTLDDSDAIGSHPIDEILLWHNAIRKELSEIAVETRKIQCSGDFTNLSSFNQRLQFIAEVCIFHSIAEDKVIFPAVDGELSFFQEHAEEESQFNDFRCLIEGIQSEGATSNSEVEFFSKLCSHADHIMETIERHFHNEEVQVLPLARKHFSFKRQCELLYQSLCMMPLKLIERVLPWLVGSLTAEETKMFLRNMQLAAPEMDSAIVTLFSGWACKARIEGLCLSSGASGCCPVQRLSDIEENIAWPSCACGSASSVRDCLVLDKSDGNRKSFKRNLLESHNHGDITENPETENVQKQCFATRSCCVPGLGVNSNNLGLSSISTAKSLRSLSFNSSAPSLNSSLFVWETESSSSDVGSAQRPIDTIFSFHKAIRKDLEYLDVESGKLSNGDEIVLRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSELSMLHEALQMNHMPENLSESNFRTSDSKGSENIKKYNELATKLQGMCKSIRVTLDHHLFREECELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLTECWKDSPAPITQIETSDHNTSRRGAEYQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKSLKAITEVASNGEQIEGQSPSFRNPDKHVYGCEHYKRNCKLRAACCGKLVTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPKCMTPSCNELSMAKYYCNICKFFDDERNVYHCPFCNICRVGRGLGIDYFHCMKCNCCLGIRSQSHKCLEKGLEMNCPICCDDLFTSSAPVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEDLPEEYKDRCQDILCHDCDKKGTSRFHWLYHKCGFCGSYNTRVIKGEESNSSCSYSY 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02624 1238 CDD Hr-like 55 181 - -
Arst3g02624 1238 SMART ring_2 1119 1160 IPR001841 -
Arst3g02624 1238 Gene3D - 1190 1232 - -
Arst3g02624 1238 CDD Hr-like 645 805 - -
Arst3g02624 1238 CDD Hr-like 297 426 - -
Arst3g02624 1238 Pfam Zinc-ribbon 1166 1223 IPR039512 -
Arst3g02624 1238 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 686 1232 - -
Arst3g02624 1238 SUPERFAMILY Zinc hairpin stack 1056 1112 IPR037275 -
Arst3g02624 1238 Gene3D nmb1532 protein domain like 297 444 - -
Arst3g02624 1238 Gene3D nmb1532 protein domain like 50 201 - -
Arst3g02624 1238 ProSiteProfiles Zinc finger CHY-type profile. 983 1052 IPR008913 GO:0008270
Arst3g02624 1238 FunFam Zinc finger protein-related isoform 1 1114 1163 - -
Arst3g02624 1238 Pfam CHY zinc finger 990 1065 IPR008913 GO:0008270
Arst3g02624 1238 SUPERFAMILY CHY zinc finger-like 985 1046 IPR037274 GO:0008270
Arst3g02624 1238 SUPERFAMILY RING/U-box 1116 1165 - -
Arst3g02624 1238 Gene3D nmb1532 protein domain like 639 869 - -
Arst3g02624 1238 MobiDBLite consensus disorder prediction 266 281 - -
Arst3g02624 1238 Pfam Hemerythrin HHE cation binding domain 294 428 IPR012312 -
Arst3g02624 1238 Pfam Hemerythrin HHE cation binding domain 57 183 IPR012312 -
Arst3g02624 1238 Pfam Hemerythrin HHE cation binding domain 643 806 IPR012312 -
Arst3g02624 1238 CDD RING-H2_Pirh2-like 1118 1161 - -
Arst3g02624 1238 MobiDBLite consensus disorder prediction 266 286 - -
Arst3g02624 1238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1163 IPR013083 -
Arst3g02624 1238 ProSiteProfiles Zinc finger CTCHY-type profile. 1055 1118 IPR017921 -
Arst3g02624 1238 Pfam Ring finger domain 1118 1160 IPR001841 -
Arst3g02624 1238 ProSiteProfiles Zinc finger RING-type profile. 1119 1161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02624 Arst-Chr3 37176778 37184315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02624 51 1237 C2H2 Transcription Factor Family AT3G18290 67.189 0.0 1642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02624 K16276 - gmx:100801725 2125.52