Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02505 ATGACCACCACAACCACCACCACTTCCTCGTCTCATATTCTCCGCCACACCTCCGACTTCATTTCCGGCGTCCTTTCTCAATCAGAGCTCCGGCGACATCTCGCCGCGACCCTCCGCCGCGAGACCACATCACTCTGCAGCCAAACAACCCTCAGACAGCTCAATCTCGCCTCCGACACCATTGAAAACGCCATCTCCTCCTCCAGCACCTCCATCCGAACCTCTTCCCTCACCCTCGCCGAGAAGCTCCTCCTCCCTCTCTCCGAACTCCCCCTCTCCTCCTTCCTCCTCTCTCTCCTCCTATTCCTCTCGAACCGCCACGTGGATTCCGCCGTACTCCTCCTCCAAATCTTCCACTCCAATCCATCCCTGGCCAGATCCGAAATCGCTCCGGTTCTCTACGATCACCTCTTCTCCCTCCACCTGCTCCCTGTTTTCCGGTGGTTCGATGAGCACAGAACGCGGATTTTGTCCGAATCGAGCAGTGATGCGAGTGATTATTCAATTACAGAGGGGTCAGTGGTGCTGCCGTGCACCAAATTGTTGTCGAGGATGAGTGAGGATCAGGCTTCGAAGCTGAGGGAGTTGGAGAGAGAGTACCAGGAGGCTATCGACCAAAATTGCAGGGTTGTTGCTGTGTATTTCAAGGAGGTTTTGACCAGTAAAAGCAGTGAAGCGTCGATTAGTCCACCGCTGTTGACTCTGAAGAGCACGGAAGATGTTGACGGAGGGAAGAACAAAGAGGAGATTCAAGAATCCCAAATGTCTGTGTTGGAGAATGGACGGTATAATCCAATATGGTCCGAAAGGGAGACATCTATTGAATTCTTGAGCAGCACCTCCAGCAGCAAATCTTCACATATAAATTATTATCCTCAAAGAGTCTCTCCCAGAATCCTCAAACGCCAAAAATCTTCGAAAGATTCAGCACCAGTCTATATGAAATCAACAAGTGAAAATAGACCTTCTTTGGATGGGAATCTGTCTTCTTCTTCAGATTCCGAAGCTGTCCTGTAGGATGACGACAAAAATGTGGCATTGTTGGAGCCTCGACAAAGCCAGTCCCATGAACAAATGCAACCTAACTTGAAAGAATTCAGAGGCTCCCCAGAGTATCATATGGCAGAGTATGATAATCCGCCGCCTGGAACTGCAAAAAATACGCCTCCTAAGGACTTTGTCTGTCCGATAACTAGTAACATATTTGATGATCCTGTGACTCTTGAGACAGGACAAACATACGAACGTAAAGCTATCGAGGAATGGTTCAAAACTGGCAACTCAACTTGTCCAATCACTCGCCAGAAGCTGCAAAACACGCAGTTACCTAAGACAAACTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACACAACCCTCATTCAGTTCCACCGCCATGTGAGAGTCCATATGAAGAAAGCAAGGCAGTAACGAAGACAATAAAGGTTTCAACTCTGCCTAAAGATGTCGTAAAACAAGCCACGGTGGATGGGATCATTAGTGAGTTGCGCCATGCAATCAATAATCTCTATATGTCAGATATTCTTGAAGAATCTGAAATGGCTGTGCTTCATATTGAGAAGCTTTGGAGAGAAGTGAATTTAGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAATGGGTTTATGGAGATCCTTTTCAATTCTGTTCAGCCCCGGGTGCTACGAGCAGCAGTGTTCCTTCTGGCCGAAACCGGTTCTAGAGACCACTCTGTTATTCAGACGCTTACGCGTGTGGACACTGACGTAGAATGTATCATGGCACTTTTCAAGAAAGGGTTGACAGAAGCTGTTGTGCTGCTGTATCTGCTAAAACCTTCCACTACAAGTCTTGCTGAGATGGCCACACCAGAATCTCTCCTAGCAGCATTCAATAAGGAAGAGGAAAACTTGGTTCCAATGTGTCTGAAGCCCAAAACAGCTGCCTTGCTTTTATTCGCACAGGTTATTGGAAGTAGTGAAGAAAGAATTGCGTTGTCAGCTGCCAAGTGTGTTTTCTCTGAAAAAGCAATCGGAAATATTGTCGCCAGTTTAGAAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCATGCAAGAGGATGGGACTTGCCGGAACACCATTGCTGAAAAGGCAGACTTGTCTCCTATTTTGGAAAGTTTCACTGGTGCAACTGATGTAGAGTGTTTAAAGATTGTCCAATTGTTCTCTGAATTAATAAAGTTAAATAGGAGGACATTTAATGAACAAATCCTCCGCTTTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACACTGCTCATTTGTCTGCAGACAGGCCTTCAAGACCAATGTCCTGTCATGGCCGGCCTTTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGCATATACCGTGAAGAGGCAATAGATACTCTCATTTCATGCCTGAGAAACACAGATTTCCCTGCTGCTCAATTAGCAGCTGCTCATACAATCATGTCACTTCAAGGGAGGTTCGACTTCTCTGGAAAGTCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTGTTGACAGAAGTCCTGGATATCTTGAACAGGTGCTCCAGATCAACAGCTTCTACCCAGAAACTGAAATAACTCCTGAAGAAGAGAAAGCAGCGGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTCAGCCACGAGTTTGGTATACTTTTCGAGGCTTTAGCAGATGGCATAAATAGCCGAAATCCAGAACTACGGTCAGCATGCTTTATATCAGCTACGTGGCTCGTATACATGTTGACCATTCTACCGGACACAGGGGTACAAGGAGCAGCGCGTGTCTGCTTGCTGAAACAGTTCATAACAAAACTAAATTCTGCTAAGGACATTCATGATAGAGTCCTTTCTATGCTTGCTCTAAATAGTTTTCTCCATTTCCCTGATGGCTTTCACGATCTAACTTCCTACACTAAGGATATCTTAAAAGGTTTGAGAGAGCTTAAGAGAATCTCTCCGTTGACATCTGAAATTCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAAGTGACATATGGATACATAAAGAGCTGATTCGAGTAGATTGCAGCGAGAATGGGGAAGTGCTGTCTCTCATTTGTTTCAAGAATAAATTATTTTCGGGCCACTCTGATGGAACTATTAAGGTTTGGATGGTAAAGGATACTTCATTCCATCTCTTGCAAGAGATCCAAGAACATCTTAAGCCTGTAACAAGTTTGGTGATTTCAGAATCTGGTGACAGACTATACAGCGGTTCACTTGATCGAACTGCAAAGGTTTGGTCTGTTGGAAAGGCAGCAATACATTGTGTACAGGTTCATGATATGAAGGAGCAGATTCATAATTTAATTGTAACTGACAGCATATCTTGTTTCACTGCACAGGGCGCTGGTGTCAAGGTTCAATCATGGAATGGAGAATCAAAAGTGTTAAATTCTAATAAATACGTTAAGTGCTTGGCTCATGTTCATGGGCGATTATACTGCGGCTGCCACGATAGCAGTGTTCAGGAGATAAATCTGGACACCGGAAACGTCAGTACTATTCAAAGTGGTTCTAAAAAACTACTTGGCAAAGCCTATCCTATTCATGCACTGCAACTTCATGGTGAACTTATATATGCAGCTGGGTCTTCCTTAGATGGATCTGTTATAAAGATGTGGGACAATTCTAGTTATAGATTGCTGGGATCTCTGCAAACCGGATTGGAAGTGCGGGCTATGGCTGTGAGCTCAGAATTAATTTACTTGGGGGGCAAGGGAGTAGCTGTGGAAATCTGGGATAAGACGAAACACAACAAACTTGACACATTACAAACGGCCACAAACAGTAGGGTTCTTTGCATGTCTCTAGACAGGAATGAAGAAATTTTGGTAATTGGAACTTCTGATGGCCAAATTCAGGCATGGAGAGTAAATTAA 3990 0.4451 MTTTTTTTSSSHILRHTSDFISGVLSQSELRRHLAATLRRETTSLCSQTTLRQLNLASDTIENAISSSSTSIRTSSLTLAEKLLLPLSELPLSSFLLSLLLFLSNRHVDSAVLLLQIFHSNPSLARSEIAPVLYDHLFSLHLLPVFRWFDEHRTRILSESSSDASDYSITEGSVVLPCTKLLSRMSEDQASKLRELEREYQEAIDQNCRVVAVYFKEVLTSKSSEASISPPLLTLKSTEDVDGGKNKEEIQESQMSVLENGRYNPIWSERETSIEFLSSTSSSKSSHINYYPQRVSPRILKRQKSSKDSAPVYMKSTSENRPSLDGNLSSSSDSEAVLXDDDKNVALLEPRQSQSHEQMQPNLKEFRGSPEYHMAEYDNPPPGTAKNTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFKTGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEHNPHSVPPPCESPYEESKAVTKTIKVSTLPKDVVKQATVDGIISELRHAINNLYMSDILEESEMAVLHIEKLWREVNLGVDIHSMLSKPPIINGFMEILFNSVQPRVLRAAVFLLAETGSRDHSVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLKPSTTSLAEMATPESLLAAFNKEEENLVPMCLKPKTAALLLFAQVIGSSEERIALSAAKCVFSEKAIGNIVASLEAEWAEERIAAVEILLRCMQEDGTCRNTIAEKADLSPILESFTGATDVECLKIVQLFSELIKLNRRTFNEQILRFIKEEGPFSTMHTLLICLQTGLQDQCPVMAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNTDFPAAQLAAAHTIMSLQGRFDFSGKSLTREVLLKRAGVDRSPGYLEQVLQINSFYPETEITPEEEKAADDWERKIASVLVSHEFGILFEALADGINSRNPELRSACFISATWLVYMLTILPDTGVQGAARVCLLKQFITKLNSAKDIHDRVLSMLALNSFLHFPDGFHDLTSYTKDILKGLRELKRISPLTSEILKVLVEENESKSDIWIHKELIRVDCSENGEVLSLICFKNKLFSGHSDGTIKVWMVKDTSFHLLQEIQEHLKPVTSLVISESGDRLYSGSLDRTAKVWSVGKAAIHCVQVHDMKEQIHNLIVTDSISCFTAQGAGVKVQSWNGESKVLNSNKYVKCLAHVHGRLYCGCHDSSVQEINLDTGNVSTIQSGSKKLLGKAYPIHALQLHGELIYAAGSSLDGSVIKMWDNSSYRLLGSLQTGLEVRAMAVSSELIYLGGKGVAVEIWDKTKHNKLDTLQTATNSRVLCMSLDRNEEILVIGTSDGQIQAWRVN 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02505 1329 SMART Ubox_2 392 456 IPR003613 GO:0004842|GO:0016567
Arst3g02505 1329 Gene3D - 1017 1144 IPR015943 GO:0005515
Arst3g02505 1329 SUPERFAMILY RING/U-box 386 465 - -
Arst3g02505 1329 ProSiteProfiles U-box domain profile. 388 463 IPR003613 GO:0004842|GO:0016567
Arst3g02505 1329 SMART WD40_4 1037 1074 IPR001680 GO:0005515
Arst3g02505 1329 SMART WD40_4 1287 1327 IPR001680 GO:0005515
Arst3g02505 1329 SMART WD40_4 1199 1245 IPR001680 GO:0005515
Arst3g02505 1329 SMART WD40_4 1079 1118 IPR001680 GO:0005515
Arst3g02505 1329 Coils Coil 186 206 - -
Arst3g02505 1329 Pfam U-box domain 390 460 IPR003613 GO:0004842|GO:0016567
Arst3g02505 1329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1086 1119 - -
Arst3g02505 1329 ProSiteProfiles Trp-Asp (WD) repeats profile. 1086 1119 IPR001680 GO:0005515
Arst3g02505 1329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 379 464 IPR013083 -
Arst3g02505 1329 SUPERFAMILY WD40 repeat-like 1049 1328 IPR036322 GO:0005515
Arst3g02505 1329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1295 1329 - -
Arst3g02505 1329 CDD RING-Ubox_PUB 390 442 IPR045210 -
Arst3g02505 1329 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1328 - -
Arst3g02505 1329 MobiDBLite consensus disorder prediction 286 338 - -
Arst3g02505 1329 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1328 - -
Arst3g02505 1329 ProSiteProfiles Trp-Asp (WD) repeats profile. 1295 1329 IPR001680 GO:0005515
Arst3g02505 1329 MobiDBLite consensus disorder prediction 309 335 - -
Arst3g02505 1329 MobiDBLite consensus disorder prediction 372 392 - -
Arst3g02505 1329 Gene3D - 1145 1329 IPR015943 GO:0005515
Arst3g02505 1329 SUPERFAMILY ARM repeat 26 1031 IPR016024 -
Arst3g02505 1329 Pfam WD domain, G-beta repeat 1083 1118 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02505 Arst-Chr3 34150317 34157512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02505 390 471 U-box Gene Family AT5G42340 47.561 1.20e-17 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02505 - - gmx:100808867 1808.11