LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g02404	ATGGCTTCTGATATTACATTTGAAGACCTCAAAAATGAGAATGTTGATCTTGAAAACATTCCCGTCGATGAGGTCTTTAAGGCACTAAAATGTAACCGAGAAGGTCTATCATCCGAAGAAGGACAGAAAAGGCTCAGTATTTTTGGACCCAACAAGCTAGAGGAGAAAAAGGAGAGCAAGATACTCAAGTTCTTGGGTTTTATGTGGAATCCACTATCATGGGTTATGGAAGCAGCTGCTATTATGGCCATTGTATTGGCCAATGGAGGGGGCAAACCACCGGATTGGCAAGATTTCACTGGTATTACGGTGCTGCTTATCATTAACTCCACCATCAGTTTCATTGAGGAAAACAACGCAGGTAATGCCGCAGCCGCTTTGATGGCTGGGCTTGCACCCAAGACCAAGGTGCTGAGAGATGGAAAATGGAGCGAACAAGAGGCAGAAATATTGGTCCCAGGAGACGTGATCAGCATCAAGCTGGGAGATATTGTCCCAGCAGATGCTCGTCTCTTGGAGGGAGATCCCCTCAAGATTGACCAAGCTGCTCTCACTGGTGAGTCCTTGCCAGTCACAAGGCACCCTGGTGAGGAGGTCTTCTCTGGTTCCACCTGCAAGCAAGGTGAGATTGAAGCAGTCGTCATTGCCACCGGCGTCCACACCTTTTTTGGCAAGGCTGCACACCTTGTAGACAGCACCAACAATGTTGGTCACTTCCAAAAGGTGTTGACCGCCATTGGTAACTTCTGCATTTGCTCAATTGCTGTGGGAATGCTTGTTGAGATCGTTGTCATGTACCCAATCCAGCATAGGGCATATAGAGATGGTATTGACAACTTGTTGGTGCTTCTCATCGGAGGAATCCCCATTGCCATGCCCACAGTCTTGTCTGTGACCATGGCTATTGGGTCCCACCGTTTGTCTCAACAAGGTGCCATCACCAAGAGGATGACAGCTATTGAGGAAATGGCAGGAATGGATGTCCTTTGCAGTGATAAGACTGGAACTCTCACCCTTAACAAGCTTACCGTCGACAAGCAATTGATTGAGGTGTTTCCCTCTGGCATGGACGTCAACACCGTTGTCCTATATGCTGCCAGGGCTTCTAGGGTTGAAAACCAGGACGCCATTGATGCATCCATTGTTGGAATGTTGAGCGATCCAAAAGAGGCAAGAGCAGGAATCACTGAGGTGCACTTCTTGCCCTTTAATCCTGTGGACAAGCGCACTGCCATTACCTTCATTGACAGCAACGGCAACTGGCATAGAAGCAGCAAGGGCGCCCCTGAACAAATCATTGAACTTTGTGACCTCAAGGGAGAGGTTTTGAAAAAGGCTCACACCATCATCGATCAGTTTGCTGATCGCGGTCTTCGTTCATTGGGTGTTGCTCGCCAGGTGAGAACTGTTTCAGAAAAGACCAAGGAGAGTGCAGGTGAAGCATGGGAGTTCTTGGGTCTCTTGCCTCTCTTTGACCCTCCAAGGCATGACAGTGCTGAAACCATTCGCCGCGCTCTCGACCTCGGCGTCAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGTAAAGAAACCGGCCGCAGGCTTGGAATGGGAACTAACATGTACCCTTCTTCCTCCCTCCTTGGTGGCAGTAAGGACGAGGCCATTGCAACCATCCCAGTCGATGAACTGATTGAGATGGCTGATGGATTTGCTGGAGTCTTTCCTGAGCACAAGTACGAGATTGTAAAGAGGTTGCAGGATAGAAAACACATCGTTGGAATGACCGGAGATGGTGTGAACGATGCACCAGCACTGAAGAAGGCCGACATTGGTATCGCAGTGGCCGATGCAACTGACGCCGCCAGGAGTGCCTCTGACATTGTTCTGACTGAGCCTGGACTCAGTGTGATCATCAGTGCTGTGTTGACAAGCAGAGCCATCTTCCAGAGGATGAAGAACTACACAATCTACGCTGTTTCCATCACAATCCGTATTGTGCTTGGGTTCCTCCTCGTTGCTCTCATCTGGAAGTTCGACTTCTCACCTTTCATGGTTCTAGTCATTGCAATTTTAAATGATGGAACCATCATGACCATCTCCAAGGACAGAGTGAAGCCATCTCCAGTTCCTGACTCATGGAAGCTCAACGAAATCTTTGCCACCGGTGTTGTTCTGGGAACATACATGGCAGTCACCAGTGCATGCTTTTTCTATATCATCCATGACACTACTTTATTCTCTAAGCATTTTGGTGTCTCCGACATATCAACAAGTGAGGAGCAGCTTAACTCTGCTCTGTACCTTCAAGTGAGTATTATCAGCCAGGCATTGATCTTTGTAACAAGGTCAAGGGGCTGGTCTTATTGTGAACGCCCTGGTTTCATGCTTGTTGGAGCCTTCCTTGCTGCACAATTGGTGGCAACTCTCATCGCTGTGTACGCACACTGGGACTTTGCCAAGATCCATGGAGTTGGGTGGGAATGGGCTGGAGTCATCTGGCTCTACAGCATTGTTACTTACATCCCTCTTGACATCCTTAAGTTCATTATCCGCATGGGACTCTCAGGTAGTGCCTGGGACAACATGCTCAACAACAAGACTGCATTCACCAACAAGAAGGACTATGGAAAGGGTGAGAGGGAAGCTCAATGGGCAAAGGATCAGCGCACAATGCACGGTCTTCATGTTAACGAATCCTCAAAGCACGGCAGCCACCACCGCGAGCAATCGGCTGAACTAGCCGAGCAAGCCAAGAGACGTGCTGAGGCTTCTAGGCTAAAAGAGCTCCACACACTCAAGGGACACGTTGAATCGGTTGTGAAGCTAAAGGGTCTTGACATTGACACCATTCAACAACATTACACAGTTTAG	2859	0.4858	MASDITFEDLKNENVDLENIPVDEVFKALKCNREGLSSEEGQKRLSIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIVLANGGGKPPDWQDFTGITVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAEILVPGDVISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTRHPGEEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAVGMLVEIVVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKQLIEVFPSGMDVNTVVLYAARASRVENQDAIDASIVGMLSDPKEARAGITEVHFLPFNPVDKRTAITFIDSNGNWHRSSKGAPEQIIELCDLKGEVLKKAHTIIDQFADRGLRSLGVARQVRTVSEKTKESAGEAWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGGSKDEAIATIPVDELIEMADGFAGVFPEHKYEIVKRLQDRKHIVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKFDFSPFMVLVIAILNDGTIMTISKDRVKPSPVPDSWKLNEIFATGVVLGTYMAVTSACFFYIIHDTTLFSKHFGVSDISTSEEQLNSALYLQVSIISQALIFVTRSRGWSYCERPGFMLVGAFLAAQLVATLIAVYAHWDFAKIHGVGWEWAGVIWLYSIVTYIPLDILKFIIRMGLSGSAWDNMLNNKTAFTNKKDYGKGEREAQWAKDQRTMHGLHVNESSKHGSHHREQSAELAEQAKRRAEASRLKELHTLKGHVESVVKLKGLDIDTIQQHYTV	952

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Arst3g02404	952	Gene3D	-	342	491	IPR023299	GO:0000166
Arst3g02404	952	Gene3D	-	133	217	-	-
Arst3g02404	952	Gene3D	-	342	491	IPR023299	GO:0000166
Arst3g02404	952	Gene3D	-	133	217	-	-
Arst3g02404	952	Pfam	Cation transporter/ATPase, N-terminus	19	82	IPR004014	-
Arst3g02404	952	PRINTS	P-type cation-transporting ATPase superfamily signature	180	194	-	-
Arst3g02404	952	PRINTS	P-type cation-transporting ATPase superfamily signature	330	344	-	-
Arst3g02404	952	PRINTS	P-type cation-transporting ATPase superfamily signature	486	497	-	-
Arst3g02404	952	PRINTS	P-type cation-transporting ATPase superfamily signature	591	610	-	-
Arst3g02404	952	PRINTS	P-type cation-transporting ATPase superfamily signature	508	518	-	-
Arst3g02404	952	PRINTS	P-type cation-transporting ATPase superfamily signature	614	626	-	-
Arst3g02404	952	SUPERFAMILY	Calcium ATPase, transmembrane domain M	15	848	IPR023298	-
Arst3g02404	952	FunFam	ATPase 4 plasma membrane-type	575	818	-	-
Arst3g02404	952	NCBIfam	HAD-IC family P-type ATPase	102	349	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst3g02404	952	NCBIfam	HAD-IC family P-type ATPase	566	678	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst3g02404	952	SUPERFAMILY	Calcium ATPase, transduction domain A	133	230	IPR008250	-
Arst3g02404	952	CDD	P-type_ATPase_H	35	844	IPR006534	GO:0008553\|GO:0016020\|GO:0120029
Arst3g02404	952	Gene3D	-	901	952	-	-
Arst3g02404	952	FunFam	Plasma membrane ATPase	484	639	-	-
Arst3g02404	952	SFLD	Haloacid Dehalogenase	312	642	-	-
Arst3g02404	952	SFLD	Haloacid Dehalogenase	312	642	-	-
Arst3g02404	952	SUPERFAMILY	HAD-like	326	638	IPR036412	-
Arst3g02404	952	Gene3D	-	95	818	-	-
Arst3g02404	952	Gene3D	-	327	628	IPR023214	-
Arst3g02404	952	SFLD	p-type atpase	312	642	IPR044492	-
Arst3g02404	952	Gene3D	-	95	818	-	-
Arst3g02404	952	Gene3D	-	327	628	IPR023214	-
Arst3g02404	952	SFLD	p-type atpase	312	642	IPR044492	-
Arst3g02404	952	SMART	Cation_ATPase_N_a_2	16	88	IPR004014	-
Arst3g02404	952	FunFam	Plasma membrane ATPase	342	491	-	-
Arst3g02404	952	PANTHER	CALCIUM-TRANSPORTING ATPASE	18	886	-	-
Arst3g02404	952	PANTHER	CALCIUM-TRANSPORTING ATPASE	18	886	-	-
Arst3g02404	952	NCBIfam	plasma-membrane proton-efflux P-type ATPase	35	809	IPR006534	GO:0008553\|GO:0016020\|GO:0120029
Arst3g02404	952	NCBIfam	plasma-membrane proton-efflux P-type ATPase	35	809	IPR006534	GO:0008553\|GO:0016020\|GO:0120029
Arst3g02404	952	PRINTS	H+-transporting ATPase (proton pump) signature	446	464	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst3g02404	952	PRINTS	H+-transporting ATPase (proton pump) signature	763	784	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst3g02404	952	PRINTS	H+-transporting ATPase (proton pump) signature	591	607	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst3g02404	952	PRINTS	H+-transporting ATPase (proton pump) signature	563	579	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst3g02404	952	PRINTS	H+-transporting ATPase (proton pump) signature	622	647	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst3g02404	952	Pfam	haloacid dehalogenase-like hydrolase	326	605	-	-
Arst3g02404	952	MobiDBLite	consensus disorder prediction	893	913	-	-
Arst3g02404	952	Pfam	E1-E2 ATPase	132	309	-	-
Arst3g02404	952	ProSitePatterns	E1-E2 ATPases phosphorylation site.	332	338	IPR018303	-
Arst3g02404	952	FunFam	Plasma membrane ATPase	133	217	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g02404	Arst-Chr3	31706162	31711005	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g02404	1	952	Primary Pumps ATPases	AT3G42640	83.824	0.0	1621

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g02404	K01535		-	gmx:100778065	1618.59