Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02399 ATGGATGGACGGAATTTTCGCGCGATTGATTCACATTATGTATTTGACAGTTCTGAGGTGCGTTTCAGGCATGCTGGCCCTGTACCACACACAGGTCGGCAAATGTATCGACGCAATAGAAGAGGACTTTCCAGAACAACTCTTGGACGGGGAAATTTTCCTGCCATTGAGTTAGTCCAAGTTGATGGTGTCGCGGTGCTTGTTAATCATTATATAGACACGGAATTGCGCGTTGAAGATATGTCTTATGAGGGATTGAATGCATTGGGCCAGCAGATTGGCCATGTAAGCACTGGTTTATCAGAGGAAATAATAACCAATCAAATGAAGACAAAAACATATTTAATGGCTGCTAGTGCTGTTAATTTGGAGGAGGCAACTTCTCAGGAGGTAGAAGCTGATGTTTGTATAATATGCCAGGATGAATACAAGAACCAAGATATGATTGGAGTTCTTCAATGTGAGCATGAATATCATGCTGATTGTTTAAGGAAATGGTTGCTTGTGAGGAATGTCTGCCCCTTGTGCAAATCAGAAGCATTCATTCTAGGGGTGTAA 558 0.4211 MDGRNFRAIDSHYVFDSSEVRFRHAGPVPHTGRQMYRRNRRGLSRTTLGRGNFPAIELVQVDGVAVLVNHYIDTELRVEDMSYEGLNALGQQIGHVSTGLSEEIITNQMKTKTYLMAASAVNLEEATSQEVEADVCIICQDEYKNQDMIGVLQCEHEYHADCLRKWLLVRNVCPLCKSEAFILGV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02399 185 FunFam E3 ubiquitin ligase BIG BROTHER 96 181 - -
Arst3g02399 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 181 IPR013083 -
Arst3g02399 185 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 26 181 IPR045191 GO:0061630
Arst3g02399 185 SUPERFAMILY RING/U-box 135 181 - -
Arst3g02399 185 CDD RING-H2_RNF24-like 134 180 - -
Arst3g02399 185 ProSiteProfiles Zinc finger RING-type profile. 136 177 IPR001841 -
Arst3g02399 185 Pfam Ring finger domain 135 177 IPR001841 -
Arst3g02399 185 SMART ring_2 136 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02399 Arst-Chr3 31574291 31576299 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02399 33 181 C3H Transcription Factor Family AT2G15530 38.667 1.77e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02399 K19041 - adu:107478552 366.311