Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02348 ATGAAAATGGCGCCTCTTATTATGATTTCATCATGTTTCGTTTGGAATCTCTGTATGGTTCTTATCGGAGTAAGTGTTAGTGTCCCTGTTGAAGCTAAATCTTGGCTTAAAGCTCATGCAACTTTCTATGGGGCCAATCAAAGTCCCATCAGCCTCGGGGGAGCTTGTGGTTATGACAACACCTTTCATGCTGGGTTTGGTGTCAACACTGCGGCGGTGAGCACCATGCTCTTCAGAGGTGGTGAGGCTTGTGGAGCATGCTACCAAGTGATTTGCGACTACCGGGTCGACCCAAAATGGTGCCTCCGGCGACGAAGTGTGACCGTAACTGCCACCAATTTTTGCCCTCCGAACAACCAGGGAGGGTGGTGTGATCCACCTCACCATCACTTTGATATGTCCGCTCCGTCTTTCTTTCGCATTGCAAGACAAGGCAGTGAAGGCATTGTTCCCGTTCTCTATACAAGGGTGCCATGCAAAAGAAGAGGTGGAGTGCGATTCACGTTGAGGGGGCAATCCAATTTCAACATGGTGATGATATCCAACGTGGGAGGCAGCGGGGACGTGAAGGCCGTCTCGATCAAAGGATCGAGAGGTCGCTCGTCTTGGCTGCCCATGCACCGCAACTGGGGAGCCAACTGGCAAAGCAGTGTGGATCTCCGGAACCAGAGGCTCTCATTCAAGCTTACATTGGCAGATGGGAAGACACTGCTGTTCCTCAATGTTGTTCCTTCTAGTTGGAGGTTTGGACAGACGTTTTCATCAAGAAACCAGTTCTCTTGA 783 0.5045 MKMAPLIMISSCFVWNLCMVLIGVSVSVPVEAKSWLKAHATFYGANQSPISLGGACGYDNTFHAGFGVNTAAVSTMLFRGGEACGACYQVICDYRVDPKWCLRRRSVTVTATNFCPPNNQGGWCDPPHHHFDMSAPSFFRIARQGSEGIVPVLYTRVPCKRRGGVRFTLRGQSNFNMVMISNVGGSGDVKAVSIKGSRGRSSWLPMHRNWGANWQSSVDLRNQRLSFKLTLADGKTLLFLNVVPSSWRFGQTFSSRNQFS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02348 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 255 IPR007117 -
Arst3g02348 260 PANTHER EXPANSIN-A15 18 258 IPR002963 GO:0009664
Arst3g02348 260 SMART dpbb_1 70 154 IPR007112 -
Arst3g02348 260 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Arst3g02348 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Arst3g02348 260 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Arst3g02348 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Arst3g02348 260 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Arst3g02348 260 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Arst3g02348 260 CDD DPBB_EXPA_N 35 159 - -
Arst3g02348 260 Gene3D - 164 260 IPR036749 -
Arst3g02348 260 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Arst3g02348 260 PRINTS Expansin signature 94 105 IPR002963 GO:0009664
Arst3g02348 260 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Arst3g02348 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Arst3g02348 260 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Arst3g02348 260 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Arst3g02348 260 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Arst3g02348 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Arst3g02348 260 Pfam Expansin C-terminal domain 165 244 IPR007117 -
Arst3g02348 260 SUPERFAMILY PHL pollen allergen 161 255 IPR036749 -
Arst3g02348 260 Gene3D - 23 160 IPR036908 -
Arst3g02348 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 164 IPR007112 -
Arst3g02348 260 SUPERFAMILY Barwin-like endoglucanases 34 182 IPR036908 -
Arst3g02348 260 Pfam Lytic transglycolase 70 154 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02348 Arst-Chr3 30558243 30561523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02348 17 258 Expansin Gene Family AT3G15370 61.029 6.23e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02348 - - ahf:112735861 540.421