Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02236 ATGCACCCACAGACAATGGAAAAACTCCAACTTTTCCGCGGCGACACTATTCTCATCAATGGAAAGAAACGGAAGGACACTATTTGCATTGCACTTGCTGATGACAATTGCGAGGTGCCCAAAATCAGGATGAACAAGGTTGTGAGGTCCAATTTGAGGGTTCGTCTTGGTGATGTTGTGTCTGTGCATCAGTGCCCTGATGTTAAGTATGGGAAACGAGTCCACATTCTGCCTATTGACGATACCGTCGAAGGTGTCACTGGAAATCTGTTTGATGCTTACTTGAAACCTTATTTCTTGGAGGCTTATCGTCCTGTCAGAAAAGGAGATTTATTCCTTGTCCAAGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGACACTGAAATTTTCTGTGAAGGTGAACCCGTGAAACGGGAGGATGAAGAAAGGCTGGATGAAGTTGGATACGATGATGTGGGTGGTGTTAGGAAGCAAATGGCACAGATCCGTGAGCTTGTAGAACTTCCACTGAGACATCCTCAGCTTTTTAAGTCGATTGGTGTTAAGCCACCCAAGGGAATTTTGCTCTATGGACCCCCTGGCTCTGGTAAGACACTAATAGCAAGAGCTGTTGCTAATGAAACCGGAGCTTTCTTCTTTTGTATTAGTGGTCCAGAGATTATGTCCAAATTGGCCGGAGGGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAAGCAGAAAAGAATACTCCATCCATCATATTTATTGATGAGATTGATTCAATTGCACCCAAGCGGGAGAAGACAAATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGACGGATTGAAGTCTCATGCACATGTTATTGTTATTGGTGCAACAAATCATCCAAATAGCATTGACCCAGCATTAAGAAGGTTTTTTGATAGAGAAATTGACATTGGTGTTCCTGATGAAGTCAGTCCACTTGAAGTCCTTCGCATACATACCAAGAACATGAAGCTTTCTGATGAGGTTGATTTGGAGAGAATATCAAAAGATACTCATGGGTATGTTGGTGCCGACCTTGCTGCTCTTTGCACTGAAGCTGCTCATACTGAGAGAGTGGTTAAAGACAAAGTCTTGGTGTTCAATTTTACTGATGTGGGAAAACTTCCCCCTCATGTTCTTAACGGCGAGAGAGCCGTTGTGCTATTCTTCATCGCTCATATACTCTTCTCTCTCCCTTTCTCTCTCTTACTCTCCCATGGTGTCCCTCTTTCTTTCCTCGCCCTTGCAGCCTCCTTCATTGAGATTAGCTATGACGCTGCCGCTTCTTCCTCTTCCCTCTTCCGCACCAGACGCGGTGCTTCTTCCGGAATCCTGCTCGGCGCCGTGACTCTCCCTGCTCTTCTACTCTCCAAGTTGACGCAATTATCAAGAGGATTCTCATTGGCACAAGTTAATCTTCAAGAGATTCACTATACGACATTGCAATACTGGGCAACATCTGCCACCAGCTTCGTGGTGCTCGTGTTCCTCAGTTTTGTTCTGTCGCACCGCACTCCTCTTTCGCGTAAGGATTGGGGTTTAGGGTTTGGCTTGTGCTTCTTGTTCTTGCAAGCTTCACTGTGCTTTCTGGCACTTGTTTCCACCTCCTCCCAAAGTGGCTTGCAACTTGCATGCAAGCTGTCATGGGTCCTTGGTCATGGATTGGCAGCGGTGATGCTAATTCAGCATTTTCTTGGAACTTTTCCATCTTGTGCTTCCATTGGGGAAGCTCTTTTGGCGACAGCTGGTATTGTTCTCTATTTTGGTGACATGCTGTTGCTTACTGTTATGAGGCTATATGGACTACTGATGTCATCAGATTTGGTCACTGCAGAGTATGAAACTAGTCGAAGTGAGATAGGCATCATAATTCAGGGAGTGCTGCTTGGCCTTCTGCTATATCCGATACCTTTCAAATATATTCTTCGTGTATGGGAATGGTCCACAAATACAGCTTCTGCTGAGTCAAGAAGATACAGTGAGATTAGAAGATCGGTTATTTTTATTTCTCTCTTTGTATTGGTCATGGTTGGGATTGTACCATTATGGATGCAGTTTGTGCATGAATTTCATCTGCATCCTATTCTCTGGGTCCTATCCTTTGTTTTATCAGATCCATTCAAAAGACTATCACTGTGTATCTATTGGGTTTGTGTAATATGTCTCTCTGTGTTATATGTCTATGACATCTCTAAGAACAGTAGGGTTGAGAGAATTCTTCTGCGGAAATACTACCATCTATTGGCTGTCTTGATGTTTGTACCTGCTCTTATCTTACAGCCAGAGTTTCTTGATCTGGGTTTTGGTGCAGCTCTGGCAGTTTTCTTGACGTTAGAAATTATTCGAATATGGAGAATCTGGCCTTTGGGACAACCAATTCATCAGTTTATGAATGCATTCACTGATCACCGGGATTCTGATTTTCTAATTGTCAGCCACTTCTCACTTTTACTTGGATGTGCACTTCCTATTTGGTTGTCTTCTGGTTACAATGATCGACCCCTTGCTCCTTTTGCGGGAATATTGAGTCTAGGAATTGGAGATACAATGGCATCATTAATTGGGCACAAGTATGGTGTTCTAAGGTGGAGTAAAACTGGCAAGAAAACAATTGAAGGTACTGCAGCTGGTATAATGTCTGTTCTAGCTTCCTGCTGGTTACTCCTTCTGTTGTTAGCTTCAAGTGGATACATTTTCACCCAGCATTGGTTCTCGTTGCTTCTATCTGTGACTGTTAGTGGTTTGTTGGAGGCATACACAGCACAACTTGACAATGCATTCATACCACTATTTTTCTATAGCCTTCTATGCTTGTAG 2883 0.4346 MHPQTMEKLQLFRGDTILINGKKRKDTICIALADDNCEVPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVQGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCISGPEIMSKLAGGSESNLRKAFEEAEKNTPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSHAHVIVIGATNHPNSIDPALRRFFDREIDIGVPDEVSPLEVLRIHTKNMKLSDEVDLERISKDTHGYVGADLAALCTEAAHTERVVKDKVLVFNFTDVGKLPPHVLNGERAVVLFFIAHILFSLPFSLLLSHGVPLSFLALAASFIEISYDAAASSSSLFRTRRGASSGILLGAVTLPALLLSKLTQLSRGFSLAQVNLQEIHYTTLQYWATSATSFVVLVFLSFVLSHRTPLSRKDWGLGFGLCFLFLQASLCFLALVSTSSQSGLQLACKLSWVLGHGLAAVMLIQHFLGTFPSCASIGEALLATAGIVLYFGDMLLLTVMRLYGLLMSSDLVTAEYETSRSEIGIIIQGVLLGLLLYPIPFKYILRVWEWSTNTASAESRRYSEIRRSVIFISLFVLVMVGIVPLWMQFVHEFHLHPILWVLSFVLSDPFKRLSLCIYWVCVICLSVLYVYDISKNSRVERILLRKYYHLLAVLMFVPALILQPEFLDLGFGAALAVFLTLEIIRIWRIWPLGQPIHQFMNAFTDHRDSDFLIVSHFSLLLGCALPIWLSSGYNDRPLAPFAGILSLGIGDTMASLIGHKYGVLRWSKTGKKTIEGTAAGIMSVLASCWLLLLLLASSGYIFTQHWFSLLLSVTVSGLLEAYTAQLDNAFIPLFFYSLLCL 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02236 960 SMART CDC48_2_2 85 151 IPR004201 -
Arst3g02236 960 ProSitePatterns AAA-protein family signature. 300 318 IPR003960 GO:0005524|GO:0016887
Arst3g02236 960 Gene3D - 68 162 - -
Arst3g02236 960 FunFam Cell division control 48 68 164 - -
Arst3g02236 960 SUPERFAMILY Cdc48 domain 2-like 67 159 IPR029067 -
Arst3g02236 960 PANTHER TRANSMEMBRANE PROTEIN 15-RELATED 410 960 IPR032974 -
Arst3g02236 960 FunFam Transitional endoplasmic reticulum ATPase 161 327 - -
Arst3g02236 960 Pfam Cell division protein 48 (CDC48), domain 2 87 150 IPR004201 -
Arst3g02236 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 378 IPR027417 -
Arst3g02236 960 CDD RecA-like_CDC48_r1-like 164 327 - -
Arst3g02236 960 SMART AAA_5 196 330 IPR003593 GO:0016887
Arst3g02236 960 FunFam Transitional endoplasmic reticulum ATPase 1 67 - -
Arst3g02236 960 SUPERFAMILY ADC-like 1 65 IPR009010 -
Arst3g02236 960 Gene3D - 163 329 IPR027417 -
Arst3g02236 960 Pfam AAA+ lid domain 351 377 IPR041569 -
Arst3g02236 960 SMART CDC48_N_2 1 68 IPR003338 -
Arst3g02236 960 Gene3D - 1 67 - -
Arst3g02236 960 Gene3D - 330 377 - -
Arst3g02236 960 Pfam Cell division protein 48 (CDC48), N-terminal domain 1 66 IPR003338 -
Arst3g02236 960 Pfam ATPase family associated with various cellular activities (AAA) 200 327 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02236 Arst-Chr3 28136722 28143785 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02236 159 376 Calmodulin-binding Proteins AT3G56690 45.946 1.38e-50 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02236 K13525 K00902 aip:107630092 1785.77