Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02235 ATGTCTCACCAGGGCGAATCATCCGACTCGAAATCGGGGAAGAAGGACTTCTCCACCGCGATTCTCGAACGCAAGAAGTTGCCGAACAGATTGGTCGTCGATGAAGCCGTCAACGACGATAATTCCGTCGTGGCCATGCACCCACAGACAATGGAAAAACTCCAACTTTTCCGCGGCGACACTATTCTCATCAATGGAAAGAAACGGAAGGACACTATTTGCATTGCACTTGCTGATGACAATTGCGAGGTGCCCAAAATCAGGATGAACAAGGTTGTGAGGTCCAATTTGAGGGTTCGTCTTGGTGATGTTGTGTCTGTGCATCAGTGCCCTGATGTTAAGTATGGGAAACGAGTCCACATTCTGCCTATTGACGATACCGTCGAAGGTGTCACTGGAAATCTGTTTGATGCTTACTTGAAACCTTATTTCTTGGAGGCTTATCGTCCTGTCAGAAAAGGAGATTTATTCCTTGTCCAAGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGACACTGAAATTTTCTGTGAAGGTGAACCCGTGAAACGGGAGGATGAAGAAAGGCTGGATGAAGTTGGATACGATGATGTGGGTGGTGTTAGGAAGCAAATGGCACAGATCCGTGAGCTTGTAGAACTTCCACTGAGACATCCTCAGCTTTTTAAGTCGATTGGTGTTAAGCCACCCAAGGGAATTTTGCTCTATGGACCCCCTGGCTCTGGTAAGACACTAATAGCAAGAGCTGTTGCTAATGAAACCGGAGCTTTCTTCTTTTGTATTAGTGGTCCAGAGATTATGTCCAAATTGGCCGGAGGGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAAGCAGAAAAGAATACTCCATCCATCATATTTATTGATGAGATTGATTCAATTGCACCCAAGCGGGAGAAGACAAATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGACGGATTGAAGTCTCATGCACATGTTATTGTTATTGGTGCAACAAATCATCCAAATAGCATTGACCCAGCATTAAGAAGGTTTTTTGATAGAGAAATTGACATTGGTGTTCCTGATGAAGTCAGTCCACTTGAAGTCCTTCGCATACATACCAAGAACATGAAGCTTTCTGATGAGGTTGATTTGGAGAGAATATCAAAAGATACTCATGGGTATGTTGGTGCCGACCTTGCTGCTCTTTGCACTGAAGCTGCTCATACTGAGAGAGTGGTTAAAGACAAAGTCTTGGTGTTCAATTTTACTGATGTGGGAAAACTTCCCCCTCATGTTCTTAACGGCGAGAGAGCCGTTGTGCTATTCTTCATCGCTCATATACTCTTCTCTCTCCCTTTCTCTCTCTTACTCTCCCATGGTGTCCCTCTTTCTTTCCTCGCCCTTGCAGCCTCCTTCATTGAGATTAGCTATGACGCTGCCGCTTCTTCCTCTTCCCTCTTCCGCACCAGACGCGGTGCTTCTTCCGGAATCCTGCTCGGCGCCGTGACTCTCCCTGCTCTTCTACTCTCCAAGTTGACGCAATTATCAAGAGGATTCTCATTGGCACAAGTTAATCTTCAAGAGATTCACTATACGACATTGCAATACTGGGCAACATCTGCCACCAGCTTCGTGGTGCTCGTGTTCCTCAGTTTTGTTCTGTCGCACCGCACTCCTCTTTCGCGTAAGGATTGGGGTTTAGGGTTTGGCTTGTGCTTCTTGTTCTTGCAAGCTTCACTGTGCTTTCTGGCACTTGTTTCCACCTCCTCCCAAAGTGGCTTGCAACTTGCATGCAAGCTGTCATGGGTCCTTGGTCATGGATTGGCAGCGGTGATGCTAATTCAGCATTTTCTTGGAACTTTTCCATCTTGTGCTTCCATTGGGGAAGCTCTTTTGGCGACAGCTGGTATTGTTCTCTATTTTGGTGACATGCTGTTGCTTACTGTTATGAGGCTATATGGACTACTGATGTCATCAGATTTGGTCACTGCAGAGTATGAAACTAGTCGAAGTGAGATAGGCATCATAATTCAGGGAGTGCTGCTTGGCCTTCTGCTATATCCGATACCTTTCAAATATATTCTTCGTGTATGGGAATGGTCCACAAATACAGCTTCTGCTGAGTCAAGAAGATACAGTGAGATTAGAAGATCGGTTATTTTTATTTCTCTCTTTGTATTGGTCATGGTTGGGATTGTACCATTATGGATGCAGTTTGTGCATGAATTTCATCTGCATCCTATTCTCTGGGTCCTATCCTTTGTTTTATCAGATCCATTCAAAAGACTATCACTGTGTATCTATTGGGTTTGTGTAATATGTCTCTCTGTGTTATATGTCTATGACATCTCTAAGAACAGTAGGGTTGAGAGAATTCTTCTGCGGAAATACTACCATCTATTGGCTGTCTTGATGTTTGTACCTGCTCTTATCTTACAGCCAGAGTTTCTTGATCTGGGTTTTGGTGCAGCTCTGGCAGTTTTCTTGACGTTAGAAATTATTCGAATATGGAGAATCTGGCCTTTGGGACAACCAATTCATCAGTTTATGAATGCATTCACTGATCACCGGGATTCTGATTTTCTAATTGTCAGCCACTTCTCACTTTTACTTGGATGTGCACTTCCTATTTGGTTGTCTTCTGGTTACAATGATCGACCCCTTGCTCCTTTTGCGGGAATATTGAGTCTAGGAATTGGAGATACAATGGCATCATTAATTGGGCACAAGTATGGTGTTCTAAGGTGGAGTAAAACTGGCAAGAAAACAATTGAAGGTACTGCAGCTGGTATAATGTCTGTTCTAGCTTCCTGCTGGTTACTCCTTCTGTTGTTAGCTTCAAGTGGATACATTTTCACCCAGCATTGGTTCTCGTTGCTTCTATCTGTGACTGTTAGTGGTTTGTTGGAGGCATACACAGCACAACTTGACAATGCATTCATACCACTATTTTTCTATAGCCTTCTATGCTTGTAG 3018 0.4394 MSHQGESSDSKSGKKDFSTAILERKKLPNRLVVDEAVNDDNSVVAMHPQTMEKLQLFRGDTILINGKKRKDTICIALADDNCEVPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVQGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCISGPEIMSKLAGGSESNLRKAFEEAEKNTPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSHAHVIVIGATNHPNSIDPALRRFFDREIDIGVPDEVSPLEVLRIHTKNMKLSDEVDLERISKDTHGYVGADLAALCTEAAHTERVVKDKVLVFNFTDVGKLPPHVLNGERAVVLFFIAHILFSLPFSLLLSHGVPLSFLALAASFIEISYDAAASSSSLFRTRRGASSGILLGAVTLPALLLSKLTQLSRGFSLAQVNLQEIHYTTLQYWATSATSFVVLVFLSFVLSHRTPLSRKDWGLGFGLCFLFLQASLCFLALVSTSSQSGLQLACKLSWVLGHGLAAVMLIQHFLGTFPSCASIGEALLATAGIVLYFGDMLLLTVMRLYGLLMSSDLVTAEYETSRSEIGIIIQGVLLGLLLYPIPFKYILRVWEWSTNTASAESRRYSEIRRSVIFISLFVLVMVGIVPLWMQFVHEFHLHPILWVLSFVLSDPFKRLSLCIYWVCVICLSVLYVYDISKNSRVERILLRKYYHLLAVLMFVPALILQPEFLDLGFGAALAVFLTLEIIRIWRIWPLGQPIHQFMNAFTDHRDSDFLIVSHFSLLLGCALPIWLSSGYNDRPLAPFAGILSLGIGDTMASLIGHKYGVLRWSKTGKKTIEGTAAGIMSVLASCWLLLLLLASSGYIFTQHWFSLLLSVTVSGLLEAYTAQLDNAFIPLFFYSLLCL 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02235 1005 Gene3D - 113 207 - -
Arst3g02235 1005 CDD RecA-like_CDC48_r1-like 209 372 - -
Arst3g02235 1005 Pfam AAA+ lid domain 396 422 IPR041569 -
Arst3g02235 1005 FunFam Transitional endoplasmic reticulum ATPase 206 372 - -
Arst3g02235 1005 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Arst3g02235 1005 Gene3D - 208 374 IPR027417 -
Arst3g02235 1005 SUPERFAMILY ADC-like 27 110 IPR009010 -
Arst3g02235 1005 SMART CDC48_N_2 30 113 IPR003338 -
Arst3g02235 1005 PANTHER TRANSMEMBRANE PROTEIN 15-RELATED 455 1005 IPR032974 -
Arst3g02235 1005 SMART AAA_5 241 375 IPR003593 GO:0016887
Arst3g02235 1005 FunFam Cell division control 48 113 209 - -
Arst3g02235 1005 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Arst3g02235 1005 Gene3D - 7 112 - -
Arst3g02235 1005 Gene3D - 375 422 - -
Arst3g02235 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 423 IPR027417 -
Arst3g02235 1005 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Arst3g02235 1005 FunFam Transitional endoplasmic reticulum ATPase 7 112 - -
Arst3g02235 1005 Pfam ATPase family associated with various cellular activities (AAA) 245 372 IPR003959 GO:0005524|GO:0016887
Arst3g02235 1005 SMART CDC48_2_2 130 196 IPR004201 -
Arst3g02235 1005 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02235 Arst-Chr3 28136690 28143785 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02235 204 421 Calmodulin-binding Proteins AT3G56690 45.946 1.53e-50 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g02235 K13525 - aip:107630092 1849.71