Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01977 ATGGGGATGAGGAGCAATAGTAATAAAGGAGGAGAAATTATTCAAGTTGAAGGGGGCCACATTGTGAGGTCCACAGGGAGAAAAGACCGCCACAGTAAGGTCTACACCGCCAAAGGACCACGCGATAGAAGGGTCAGGCTATCCGCCCACACCGCCATCGAATTCTACGACGTTCAGGACCGTCTCGGCTACGACCGCCCCAGCAAGGCCGTCGATTGGCTCATCAAGAAAGCTCAGCCCTCCATCGACAAGCTAGCCGAGCTTCCTCCCTGGCACCCACCTCTCTCAGCCGCCCCGCTGCAGCAGGATCAAGAAGAAGAGGAGGAGGAGGAGGAACATAATAATGATATTATTAATCAGCAATTCCATTCGTCTTCACACTTGCTTCAGATTCAGCAACAGCAGCAACAAAACCTTGAAACTGACCCCATAGCTTTCTTCCCTACAAGCTCAGCTACTCCCTCTATGAATTTCCAAAACTACCCTCACGAGATGATTTCAAGAACCGCCAACAACAACGTTAACCCCATTACGGAAGATCTTGGACTTTCACTCCACCCGTTTCAACAAGCACCTTCCAATCAACATCAAGGTACTCTCTTTGCTGCTGGATCCAGTAACAACGTCGGATTTGAGAGCCAGTATCAGAAGATTGTAGCTTGGAACAACGAAGCTGCTACCATGGATATCAACAGGGTAGGGTTCATGGTGAACCCGCAGCAGAATCATCATCATCATCCATTTCTAAGCCAAAGTGTGAGTGGGTCCCTTCAGTCAAGTTTTCCACCACCATCACTTAGATCTTGGGGTGAAATTCCGATGAACCCAAACTCCTCGGAACAACAACACAGCAGGCCACAACAACTGATTCACCATGCTTCCATATTTGGAAGCAGGTTTGTTTCTGATGGATTAGCAGCAGGGTTTTGCATTCCAGCTAGAATTCAAGGCGACCAAGAGAACCATCATGGAGTTGCTTCTAACACCACTCCATCTTCTGCTTCTCCTCATTCTCACCACTGA 1023 0.4858 MGMRSNSNKGGEIIQVEGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAQPSIDKLAELPPWHPPLSAAPLQQDQEEEEEEEEHNNDIINQQFHSSSHLLQIQQQQQQNLETDPIAFFPTSSATPSMNFQNYPHEMISRTANNNVNPITEDLGLSLHPFQQAPSNQHQGTLFAAGSSNNVGFESQYQKIVAWNNEAATMDINRVGFMVNPQQNHHHHPFLSQSVSGSLQSSFPPPSLRSWGEIPMNPNSSEQQHSRPQQLIHHASIFGSRFVSDGLAAGFCIPARIQGDQENHHGVASNTTPSSASPHSHH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01977 340 MobiDBLite consensus disorder prediction 246 288 - -
Arst3g01977 340 ProSiteProfiles TCP domain profile. 27 85 IPR017887 -
Arst3g01977 340 MobiDBLite consensus disorder prediction 321 340 - -
Arst3g01977 340 MobiDBLite consensus disorder prediction 1 32 - -
Arst3g01977 340 Pfam TCP family transcription factor 26 138 IPR017887 -
Arst3g01977 340 Coils Coil 100 121 - -
Arst3g01977 340 MobiDBLite consensus disorder prediction 320 340 - -
Arst3g01977 340 MobiDBLite consensus disorder prediction 88 114 - -
Arst3g01977 340 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 337 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01977 Arst-Chr3 23638635 23640308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01977 6 340 TCP Transcription Factor Family AT1G53230 40.052 1.39e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Arst3g01977 TCP 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01977 - - pvu:PHAVU_005G097200g 309.686