Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01930 ATGATGATCCTTCAAAATATGGATCATGGAGAACTCTCTAACGCTTTCCCTCATCATCAGAATCAGAATCCAACTACTACTCCTCCTCCTTCTTTGAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCGGAAGCGGAAGTAATAGCCTTATCCCCAAAGACACTAATGGCTACAAACAGGTTCTTGTGTGAAACCTGTGGGAAGGGTTTCCAAAGGGATCAAAACCTTCAACTCCATAGAAGAGGACACAACCTTCCATGGAAGCTAAAACAAAGAACAAATAAAGAACCAAAGAAGCGTGTATACGTGTGTCCGGAGAAAACATGTGTCCACAACCACCCTTCAAGGGCTTTGGGAGACTTGACCGGAATCAAGAAGCACTTTTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAATGCTCCAAGCGTTACGCGGTTCAGTCCGACTGGAAAGCCCACTCCAAAACCTGTGGTACAAGAGAATATAAGTGTGATTGTGGAACCATCTTTTCACGGAGGGATAGCTTCATAACTCACAGGGCATTTTGTGATGCATTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAAGCATAAACAACTCAACATTAGGGGCTAATAATAATAACAATAACATTATTGGTTACAATAACATGATGATAGGAACCTCCATGGCCCCTCATAATAATAATAATAATAATAACATGGCAACCCAATTTGCTTCAATTTGCAATAAGCCAATTCCATTCACTGAAGAAGCCACAAATAACCAAACAACAACAAGAGGATTATCCCTTTGGATGGACCATCATCATCATCATCGTCAAGAAGCAACAATGGCTACTAATAACAATAATTACCATCTGAACTGGGTATTCGGATCCAAAATTTCGACCAATCCAAGCCAAGATCTAAGTAGCAACAACACTATTACTAGTACTACTACTACATCGCTTCCAATACTAGGAAGCATTGTTAATGTTCCTTCATTGTATAGCTCACAACATCAACCCCATCAAACATGTGCTTCTTCGTCGTCGGCGAACATGTCGGCGACGGCATTGTTGCAGAAAGCAGCTCAAGTTGGTGCAACCTCAAGTGATCCATCATCATTCTTGGGGGCATTAGGGTTGAAATGCAGCAATGGTAGTGATCAAGGGCAAGATGGGAATAACAATAAGTTTTGTGGGGTGTATGGTTCAAGTTTGGTGCTAACAAGTAGTAGTAATAATATTAATAGAGAGGCAGAGAAGAATGAATTGTCACAAATGCACCCTTCAAAGAGGAGACATGTAATGCCGAATGAGGAGAGTGGAGGAGGGCAAACTAGGGATTTCCTTGGTGTTGGGGGTGCAAACCACCATTTGCCACCCTTTATCAACCAAAGCTTGGATTTGATTTGA 1413 0.4239 MMILQNMDHGELSNAFPHHQNQNPTTTPPPSLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEPKKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASSINNSTLGANNNNNNIIGYNNMMIGTSMAPHNNNNNNNMATQFASICNKPIPFTEEATNNQTTTRGLSLWMDHHHHHRQEATMATNNNNYHLNWVFGSKISTNPSQDLSSNNTITSTTTTSLPILGSIVNVPSLYSSQHQPHQTCASSSSANMSATALLQKAAQVGATSSDPSSFLGALGLKCSNGSDQGQDGNNNKFCGVYGSSLVLTSSSNNINREAEKNELSQMHPSKRRHVMPNEESGGGQTRDFLGVGGANHHLPPFINQSLDLI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01930 470 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Arst3g01930 470 Gene3D Classic Zinc Finger 41 115 - -
Arst3g01930 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Arst3g01930 470 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Arst3g01930 470 FunFam protein indeterminate-domain 12-like 41 109 - -
Arst3g01930 470 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Arst3g01930 470 MobiDBLite consensus disorder prediction 15 32 - -
Arst3g01930 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 456 IPR031140 -
Arst3g01930 470 Gene3D Classic Zinc Finger 131 198 - -
Arst3g01930 470 MobiDBLite consensus disorder prediction 421 448 - -
Arst3g01930 470 MobiDBLite consensus disorder prediction 1 46 - -
Arst3g01930 470 MobiDBLite consensus disorder prediction 421 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01930 Arst-Chr3 22645969 22648993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01930 29 453 IDZ Gene Family AT1G03840 52.146 8.47e-140 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst3g01930 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01930 K25870 - gmx:100790620 573.933