Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01879 ATGTCGCCATATTATTGCTTGTTGTGCCAACCAGCGTCTCGATTGGCAGCTCTTCCTCACTCAGCCACTCCTCAGTTCGTCGTCACTCAGCCACTCCTCGACGGCCTCAGTTCCTCAGTTCCTGCGTTCCTCACGGAGTCACCGTTTATAGCCACCGCTGCTGCTCCGTCTGGCCGTCGTCGCTGCTGCCTGCTAGTCTCGGTCCTGGGCTCCTGGGTCTTGTCCTCTGACTCTGCTGGTCTCGCTCTCCATCACGGGCTCACGGCTGCTCCTCGCCTCATCTGTGGCTCTGTCCTGGTCCTCGTCTCCTCTGGAAATATGAATTCTGAAACTGTGAGTAACCTTGTTACTACTGGAGTTGGTTCTGAGGCTGCTCCGGTCGAGGTTGATGAACCTAGTTTGAAAAGGCTGAGACCAGCAACCTCTGATGTTTGGAATTTTTTCAAAAAGCTCGGTCCAGATAAGGATGGAGTAGAACGTGCTGAGTGTAAAGGATGCAAGAAAGTGTTTAAAGCTGGAGGTAAGCGATATGGCACTTCTACTATAAAACGGCATCTTGATAGTTGTACTCAAATTAAGCATGAAGATATTGGTCAGACTATAGCAGAATTGCAACTTAAAATGGGTTCACTTAAGATTGATTCAGGAGTGGCTAGAGATATGTTTGCTGGGTATGTAGTTGCTGGGGATAAGCCTTTTAATATGGTTGATGATAGGAGATTTAGAAATTGGGTGAAATATATTAGTCCAACTTTGAAACTTCCTTCTAGGAATACGGTTAAAGCTGACATAGTGAAAGTTTACAAGAGAGAAGCTGCGAAACTTAAAAAAAATTTAGTTTCCATTCCAAATAGAATTTGCTTAACATCTGATCTTTGGACTTCCAGATATGAATTGTCTTCTAAAATCTTTACGCTTTTGACTGAGTGGAAAACTGATAAAAAGATTTTTTTCATTACTTTGGATAATGCTTCTTCTAATGATACTTGTGTTGAACACTTGAAAAGTACTTTGGATGTGCATGGTTCATTGTTGTGTGGTGGTGAATTCTTTCATCTCCACAATTCGGTTAAGAAGCGAGAACCGGAAGAGAAAGAAGCTGATGATGGTGATGACGAGGATGGAGAAGAACAGGAGGAGCTGCAGGTGAAGAGGGGAAAATTCGGAATAGCTAAAATTTCACAATTTCAGTTTGATCACACTGGACCGTTTGAGCCTCTTGTCCTTTCTTCAGATGCAGAAGTTCCAGTCATTCAGGTTCCCGCAACTATAAATTGTAGACTACTTGAGCATCAAAGAGAGGGAGTGAGATTTCTGTATGGTTTGTATAAAAACAATCATGGTGGTATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTATCTTTGGTAAGGAAAGAGACTCTATGCTGGGTGAAAATGACGAAGAGAAGAGAGACCCTGTATTGATAATCTGTCCAACTTCTGTCATTCATAATTGGGAGAGTGAGTTCTCTAAATGGGCTAATTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATCTGATACATGAGAAACTAGAAGCAAATGGAGTGGAGATACTTATTACAAGTTTTGACACTTACAGAATTCACGGAAGTTCCTTGTCAGATTTCGAATGGGGCATTGTGATTGTTGACGAGGCTCACCGGCTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTTAGACGTTATGGTCTTACAGGGACCATAATGCAAAATAAGATAATGGAGTTGTTTAATCTCTTTGACTGGGTTGCACCTGGATCACTTGGGACACGGGAGCACTTTCGTGAGTTCTATGATGAACCCCTTAAACATGGTCAGAGGTCATCTGCTCCTGACAAGTTTGTCCAAATTGCTAATAAAAGAAAACAACACCTTGTGAATGTTCTTCATAAATATTTGTTGAGAAGGACAAAGGAAGAGACAATTGGACATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCCATGAGTGATTTGCAAAGACGTGTTTACAAGAGAATGTTACAGCTTCCTGATATCCAATGCCTTATAAACAAGGACCTGCCTTGTAGTTGTGGTAGCCCACTTACACAAGTTGAATGTTGTAAGAGGACAGTACCAAATGGAATTATTTGGCCTTACCTTCACCGAGATAACCCTGATGGTTGTGATTCATGCCCTTTCTGCATTGTCCTTCCGTGCCTTGTCAAGCTTCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGAGAAGCAAGGCAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCTCTGATATTGATTTGGTTGGCGGAAATATGCAGAGTGAGAGTTTCATGGATCTAAGTGATGTGAAACATTGTGGAAAAATGCGAGCACTTGAAAAACTTCTGTACTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCAGTGAGGATGCTTGACATACTGGAGAAATTTCTCATACGGAAAGGCTACTGCTTCTCAAGACTTGATGGGTCTACTCCGACAAATTTGCGCCAGTCTTTAGTTGATGATTTCAACTCCAGTCCTAGCAAACAAGTATTTTTGATATCAACTCGTGCCGGTGGGCTTGGGTTGAACCTTGTCAGCGCAAACCGGGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCCCAGGACAGGTCCTTTCGTTTTGGGCAGAAGCGACATGTTCTGGTGTTCCGTCTTCTTGCAGCCGGTTCGCTTGAAGAACTTGTTTATTCTCGTCAGGTGTATAAGCAGCAACTTTCAAACATTGCTGTCTCAGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGGGATTTATCTGACAAGCTATTTACTAGTGAAATCATTAAACTGCATGAAATGGGAAAGGAACATCACAATACAATAGAACAGGAAAAAGAAAATCTTTTAGAAGAAACTGATTCTCTAAGATCGGCGTCTGACACTGAAATATGTGCTGGAACTGCAAGCAACGTAGCAAGTAAACCAGATTTTGAAGACCTTGGAATTGTGTATGCTCATCGAAATGAAGACATTGTCAACTGTGGACCTGTGATTCAGGGGAAGATAGATAGCAGCATCCCTTCAAAGAGTGATAGCTTAGTCAAGCCAAGCATCTCTTCAGTCAACCAAAGAAATAAACCAGATTGTGTACCTAAAAAACAGAAAGCTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGCCTGCTTGCACATTCTATGGGCATGGAAGAGCTTGCATTTAGCAAATGGTTACTATCAGCAACTCCTAAGGAGAGGGAGGAAGTGCTTCGAGACTTCAAGAAGAAAAAGAAGATGCCTAATGGTTAA 3504 0.4189 MSPYYCLLCQPASRLAALPHSATPQFVVTQPLLDGLSSSVPAFLTESPFIATAAAPSGRRRCCLLVSVLGSWVLSSDSAGLALHHGLTAAPRLICGSVLVLVSSGNMNSETVSNLVTTGVGSEAAPVEVDEPSLKRLRPATSDVWNFFKKLGPDKDGVERAECKGCKKVFKAGGKRYGTSTIKRHLDSCTQIKHEDIGQTIAELQLKMGSLKIDSGVARDMFAGYVVAGDKPFNMVDDRRFRNWVKYISPTLKLPSRNTVKADIVKVYKREAAKLKKNLVSIPNRICLTSDLWTSRYELSSKIFTLLTEWKTDKKIFFITLDNASSNDTCVEHLKSTLDVHGSLLCGGEFFHLHNSVKKREPEEKEADDGDDEDGEEQEELQVKRGKFGIAKISQFQFDHTGPFEPLVLSSDAEVPVIQVPATINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKERDSMLGENDEEKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRDLIHEKLEANGVEILITSFDTYRIHGSSLSDFEWGIVIVDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSSAPDKFVQIANKRKQHLVNVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDLQRRVYKRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPNGIIWPYLHRDNPDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPKDDPEKQGKDAEFAAAVFGSDIDLVGGNMQSESFMDLSDVKHCGKMRALEKLLYSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVLVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIKLHEMGKEHHNTIEQEKENLLEETDSLRSASDTEICAGTASNVASKPDFEDLGIVYAHRNEDIVNCGPVIQGKIDSSIPSKSDSLVKPSISSVNQRNKPDCVPKKQKAPLIDERKRTQYSLLAHSMGMEELAFSKWLLSATPKEREEVLRDFKKKKKMPNG 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01879 1167 SMART ultradead3 424 619 IPR014001 -
Arst3g01879 1167 SUPERFAMILY Hermes dimerisation domain 218 271 - -
Arst3g01879 1167 Gene3D - 406 660 IPR038718 -
Arst3g01879 1167 PANTHER SNF2/RAD54 FAMILY MEMBER 359 1109 - -
Arst3g01879 1167 MobiDBLite consensus disorder prediction 1086 1109 - -
Arst3g01879 1167 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 409 660 - -
Arst3g01879 1167 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 557 566 IPR002464 -
Arst3g01879 1167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 820 973 IPR001650 -
Arst3g01879 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 665 985 IPR027417 -
Arst3g01879 1167 CDD SF2_C_SNF 811 940 - -
Arst3g01879 1167 SMART bed5 139 192 - -
Arst3g01879 1167 MobiDBLite consensus disorder prediction 357 381 - -
Arst3g01879 1167 Pfam Helicase conserved C-terminal domain 817 929 IPR001650 -
Arst3g01879 1167 Gene3D - 673 1040 IPR027417 -
Arst3g01879 1167 Coils Coil 1016 1036 - -
Arst3g01879 1167 ProSiteProfiles Zinc finger BED-type profile. 139 201 IPR003656 GO:0003677
Arst3g01879 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 661 IPR027417 -
Arst3g01879 1167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 440 611 IPR014001 -
Arst3g01879 1167 MobiDBLite consensus disorder prediction 1086 1105 - -
Arst3g01879 1167 SMART helicmild6 846 929 IPR001650 -
Arst3g01879 1167 Pfam SNF2-related domain 444 701 IPR000330 GO:0005524|GO:0140658
Arst3g01879 1167 SUPERFAMILY beta-beta-alpha zinc fingers 142 195 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01879 Arst-Chr3 22078562 22090330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01879 818 959 RAD5 or RAD16-like Gene Family AT5G43530 39.437 2.59e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst3g01879 SNF2_N 6.2e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01879 K20098 - gmx:100781003 1346.26