Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst3g01858 | ATGACGCATGCTCATCCAGGGCAGAAACTTTCAGGAAATCAAACTCTAGTTTCCTATGGACAAATATTTGAAATGGGTTTCTTCTCACCGTCAGGTTCAGAACTTGACAAGCATGGCAATCTCTCTCTCTATACTTCCACCGGTCATGCAGTTTGGTCAACCAACTCTTCCTTTAGTTTGGGTCCCTTGGATTCGATAGCTGCTAATCTTCGGGAAGATGGAAATTTTATTATAAGCAGGTCAGTCGATGACTACAGTTGGCAAAGCTTTGATTACCCAACTGATACCTTGCTGCCTAATGCGTATTTGGAATATGATAATGACAGAGGTATTAAAAGGGTTCTGAAATCTTGGCTAGCTACAAGTAATCCATCAACTGGCAACTTCTCTGCTGAGGTAACTACAGTTTCTGTGGATTTAGCTGAGGTTCAATTGTTGCAAAATGATGGTTTTACTGAGTCTAAATTCTGCATAAATCGGTTTCATGAAACCATAGATTACGTGTATGATTTTGAATTTCACTTTATAATATACGCAGACATTTACTCGTATGTTTTGTTTTCATATGGCAACTCATACAATCTTGCAAGATATGTGTTAGATGTATCTGGAAAGCTCAAACTTTTAGGGTGGTCAAACGAATGGGTTACCGTCAACATGGACCACAAAAAATGTGACTTTCTCGGTCATAATGAGGATACAGGAGTGAATGGCAAACATAGTGGAAGGAAGAATGCTACTTGGGTGGTTGTGGAGGTGGTGATTGGGCTTACTACTGTGATTGTTGCTATTGCCATTTTGCTGATAAGGCTATGGAAGAGAGGCACCACCACTTCATCTAAGGTAATGGGAGGAGATACATTGAAGCAGTACAACTACAGAGATTTGAGAAAAGCAACTAGAAACTTCACAATTAAGCTTGGAAACGGTGGTTTCAGCACTGTTTACAAAGGGGAATTCCCTGATTCAACTTTCGTAGCTGTCAAGGAACTTCGAGGACACTTTCAAGAAGAAAAACAGCTTCGAGCAGAACTCAATACGGTAGGGCTGATCCAGCACAAAAATCTTGTTCGCTTACTTGGATTCTGCTTACAAGGTTCCCAGAGATTCATAATTTATGATTACATGCCAAATGGTTCTCTAGAATCTCACTTGTTCCAGAGTGATTCTAATGTCTTAGATTGGCGAACTAGATACAATATTATTCTTGCGACTGCCAAAGGTTTAGCTTACTTACACGAGCATTGTAGAGACTGCATCATTCATTGCGACATCAAGCCGGAAAACATTTTGTTGGATGCTGAATTTAATCCTCAAGTCGCGGATTTTGGCTTGGCAAAGCTTCTAGGCCGAGACTTCAGCCGGGTTCTTACCACCATGAGAGGAACAAGAGGCTATCTAGCACCAGAGTGGTTCTCTGGTGTCCCAGTCACTGCAAAAGTTGATGTGTATAGCTACGGCCAGGTCCTTCTTGAGATCATTTCAGGTAGAAGGAATATGGATCTAGTAAATGACGATCTAGCTAGTTATTTCCCGGCAATTGTTTTCAATGCATTGAACAATGGGGAGGATGTTCTGCCTTTAGTAGATTCCAAACTACAAGGCAAATTCAGCGCAGAAGAGGTAAATAGAGCATGCAAGGTTGGTTGTTGGTGCATTCAAGATGATGAGAATGATAGACCAACAATGAAAGAGGTTGTTCAAGCTTTGGAAGGAAATCTTGATGTAGATATTCCTCCTATTCCCCAGTTTTTCCTGTCCTTAGCAGAACCTTCTGTCCAAAAAGGTGATCTGAAGGAAAGCAAGGATTATAGTACATCGAGCACACTACCTTCAAGTTTCAGCTTTCAAGCACCAGTTCACGCAGTTCAGGATGAACCTTGA | 1884 | 0.4114 | MTHAHPGQKLSGNQTLVSYGQIFEMGFFSPSGSELDKHGNLSLYTSTGHAVWSTNSSFSLGPLDSIAANLREDGNFIISRSVDDYSWQSFDYPTDTLLPNAYLEYDNDRGIKRVLKSWLATSNPSTGNFSAEVTTVSVDLAEVQLLQNDGFTESKFCINRFHETIDYVYDFEFHFIIYADIYSYVLFSYGNSYNLARYVLDVSGKLKLLGWSNEWVTVNMDHKKCDFLGHNEDTGVNGKHSGRKNATWVVVEVVIGLTTVIVAIAILLIRLWKRGTTTSSKVMGGDTLKQYNYRDLRKATRNFTIKLGNGGFSTVYKGEFPDSTFVAVKELRGHFQEEKQLRAELNTVGLIQHKNLVRLLGFCLQGSQRFIIYDYMPNGSLESHLFQSDSNVLDWRTRYNIILATAKGLAYLHEHCRDCIIHCDIKPENILLDAEFNPQVADFGLAKLLGRDFSRVLTTMRGTRGYLAPEWFSGVPVTAKVDVYSYGQVLLEIISGRRNMDLVNDDLASYFPAIVFNALNNGEDVLPLVDSKLQGKFSAEEVNRACKVGCWCIQDDENDRPTMKEVVQALEGNLDVDIPPIPQFFLSLAEPSVQKGDLKESKDYSTSSTLPSSFSFQAPVHAVQDEP | 627 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst3g01858 | 627 | FunFam | S-receptor-like serine/threonine-protein kinase | 272 | 375 | - | - | |
| Arst3g01858 | 627 | CDD | STKc_IRAK | 307 | 572 | - | - | |
| Arst3g01858 | 627 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 35 | 118 | IPR036426 | - | |
| Arst3g01858 | 627 | Pfam | Protein kinase domain | 306 | 568 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Arst3g01858 | 627 | SMART | serkin_6 | 301 | 570 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Arst3g01858 | 627 | SUPERFAMILY | Protein kinase-like (PK-like) | 281 | 571 | IPR011009 | - | |
| Arst3g01858 | 627 | PANTHER | OS07G0415500 PROTEIN | 237 | 582 | - | - | |
| Arst3g01858 | 627 | FunFam | Serine/threonine-protein kinase | 376 | 578 | - | - | |
| Arst3g01858 | 627 | ProSiteProfiles | Protein kinase domain profile. | 301 | 585 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Arst3g01858 | 627 | SMART | blect_4 | 7 | 93 | IPR001480 | - | |
| Arst3g01858 | 627 | MobiDBLite | consensus disorder prediction | 597 | 627 | - | - | |
| Arst3g01858 | 627 | Pfam | D-mannose binding lectin | 34 | 118 | IPR001480 | - | |
| Arst3g01858 | 627 | Gene3D | Phosphorylase Kinase; domain 1 | 268 | 375 | - | - | |
| Arst3g01858 | 627 | Gene3D | - | 5 | 160 | - | - | |
| Arst3g01858 | 627 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 420 | 432 | IPR008271 | GO:0004672|GO:0006468 | |
| Arst3g01858 | 627 | MobiDBLite | consensus disorder prediction | 603 | 619 | - | - | |
| Arst3g01858 | 627 | ProSitePatterns | Protein kinases ATP-binding region signature. | 307 | 329 | IPR017441 | GO:0005524 | |
| Arst3g01858 | 627 | ProSiteProfiles | Bulb-type lectin domain profile. | 1 | 91 | IPR001480 | - | |
| Arst3g01858 | 627 | Gene3D | Transferase(Phosphotransferase) domain 1 | 376 | 577 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst3g01858 | Arst-Chr3 | 21799218 | 21803422 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst3g01858 | 281 | 580 | Receptor kinase-like Gene Family | AT5G20050 | 42.453 | 1.89e-71 | 236 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_SD-2b | Arst3g01858 | Pkinase | 1.7e-46 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst3g01858 | - | - | ahf:112789804 | 1238.4 |