Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01850 ATGGATCCTGGAAGTCAACCCTCATCTTCAACCACCAACAAGATTGAAAGAAGGCTCATTGAGAAAAACAGAAGGAACCACATGAAGATGCTTTACTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCCAAGGAAGCGTTGCCACTGCCGGATCAAGTGGACGAAGCTATAAACTACATAAAGAACTTAGAGGAGAAGGTGAAGACAGCCAAGGAGAAGAAAGACGGCTTATTGGAAAGAATGGGAAGGAAAAGGACACGTGGCGGTGGCCGCGATGGTAGTGGTTGCAGCAACACGAAACCGCCACAACTTGAGGTTCATGAAACTGGTTCATGTCTTGAAATTGTAATGACATGTGGCTTAGAAAACCAGTTCATATTCTATGAGATCATTCGCATACTCAATGAAGAGAACATCGATGTTAAGAGTGCTAATTCCTCACTCCTCGGAGATTCTATGATCCATGTTCTCCATGCAGAGATTCCTCCGCTATTGATTGAATTTGGGGCGACTAAAGTGAGTGAGAGATTGAAAAGGTTTGTGAATGGATCAGCCAGTGATATTGAATTATTGCAACCAGAGTTCTGGGATTTTGAGATTGACACTGATATCTGGAGCTTCTAG 627 0.4322 MDPGSQPSSSTTNKIERRLIEKNRRNHMKMLYSKLNSLLPNYNPKEALPLPDQVDEAINYIKNLEEKVKTAKEKKDGLLERMGRKRTRGGGRDGSGCSNTKPPQLEVHETGSCLEIVMTCGLENQFIFYEIIRILNEENIDVKSANSSLLGDSMIHVLHAEIPPLLIEFGATKVSERLKRFVNGSASDIELLQPEFWDFEIDTDIWSF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01850 208 Gene3D - 4 88 IPR036638 GO:0046983
Arst3g01850 208 Pfam Helix-loop-helix DNA-binding domain 15 65 IPR011598 GO:0046983
Arst3g01850 208 Coils Coil 54 81 - -
Arst3g01850 208 SMART finulus 18 70 IPR011598 GO:0046983
Arst3g01850 208 MobiDBLite consensus disorder prediction 72 103 - -
Arst3g01850 208 MobiDBLite consensus disorder prediction 1 23 - -
Arst3g01850 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Arst3g01850 208 FunFam Transcription factor bHLH162 4 89 - -
Arst3g01850 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 82 IPR036638 GO:0046983
Arst3g01850 208 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 182 - -
Arst3g01850 208 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01850 Arst-Chr3 21789501 21790769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01850 6 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.095 1.01e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst3g01850 HLH 9.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01850 - - gmx:100817883 263.848