Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01819 ATGATTTCTAGGTTCAAGCACCTGCAAGAGAAATCAGTACTAAAACAAACCAAAAATATGACCTCAGATCAGTACTTCAGGGATGCTGCTCGCGAAATCAGTACCTTCGAAGACATACCCTCCTTGGAAAAGTGGAAATCTTCCACCAATGCTGGTGTAGATTCCGATCGAAATGCCACCGAAGGATTCGACTGCAACATCTGCCTAGAATGTGTGCAAGAACCGGTAGTTACCCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAAACATGGAGCAGCAGAAGCCACAATGTCCTGTGTGCAAATCAGAAGTTTCTCAATCCTCCCTAGTTCCACTCTACGGCCGGAACCAAGTCGCAACGCCGTCCGGCAAAAATGCTCGCCAATTAGGCTCTTCGATACCTAGAAGACCCCCTGGCCGGAGACCATACAATCCTGCAGCATCTGTTTTACAATCTACTTCTGAAACTAATCAACCTCGGCCATTCGACTCGATTCAAAGCAGTTACACTTCAACATCTGGAATTTTTGGTGAGATGATATATGCAAGGGTGTTTGGTAATCAATTGAGGAACATGTATACATATCCAAATTCTTATTGTCTTTCAGGGAGTAGCAACCCAAGGATCAGAAGGCAATTGATGGAAGCTGATGAATCACTCAGTAGAATATGTTTTTTCCTCTTCTGCTGCTTGGTTATGTGTCTTCTCTTGTTCTGA 756 0.4431 MISRFKHLQEKSVLKQTKNMTSDQYFRDAAREISTFEDIPSLEKWKSSTNAGVDSDRNATEGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKNMEQQKPQCPVCKSEVSQSSLVPLYGRNQVATPSGKNARQLGSSIPRRPPGRRPYNPAASVLQSTSETNQPRPFDSIQSSYTSTSGIFGEMIYARVFGNQLRNMYTYPNSYCLSGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01819 251 SUPERFAMILY RING/U-box 56 120 - -
Arst3g01819 251 ProSiteProfiles Zinc finger RING-type profile. 65 114 IPR001841 -
Arst3g01819 251 MobiDBLite consensus disorder prediction 133 178 - -
Arst3g01819 251 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 48 127 - -
Arst3g01819 251 SMART ring_2 65 113 IPR001841 -
Arst3g01819 251 ProSitePatterns Zinc finger RING-type signature. 80 89 IPR017907 -
Arst3g01819 251 MobiDBLite consensus disorder prediction 159 178 - -
Arst3g01819 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 37 249 IPR045103 GO:0005783|GO:0006511|GO:0061630
Arst3g01819 251 Pfam RING-type zinc-finger 65 111 IPR027370 -
Arst3g01819 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 144 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01819 Arst-Chr3 21273962 21276526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01819 63 251 C3H Transcription Factor Family AT4G28270 42.784 2.39e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01819 K10666 - gmx:100785491 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g01819 3 21273962 21276526 Arst3g01819 3 21273962 21276526 ECH
Arst3g01819 3 21273962 21276526 Arst8g02288 8 32002920 32005543 PCT