Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01818 ATGACCTCAGATCAGTACTTCAGGGATGCTGCTCGCGAAATCAGTACCTTCGAAGACATACCCTCCTTGGAAAAGTGGAAATCTTCCACCAATGCTGGTGTAGATTCCGATCGAAATGCCACCGAAGGATTCGACTGCAACATCTGCCTAGAATGTGTGCAAGAACCGGTAGTTACCCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAAACATGGAGCAGCAGAAGCCACAATGTCCTGTGTGCAAATCAGAAGTTTCTCAATCCTCCCTAGTTCCACTCTACGGCCGGAACCAAGTCGCAACGCCGTCCGGCAAAAATGCTCGCCAATTAGGCTCTTCGATACCTAGAAGACCCCCTGGCCGGAGACCATACAATCCTGCAGCATCTGTTTTACAATCTACTTCTGAAACTAATCAACCTCGGCCATTCGACTCGATTCAAAGCAGTTACACTTCAACATCTGGAATTTTTGGTGAGATGATATATGCAAGGGTGTTTGGTAATCAATTGAGGAACATGTATACATATCCAAATTCTTATTGTCTTTCAGGGAGTAGCAACCCAAGGATCAGAAGGCAATTGATGGAAGCTGATGAATCACTCAGTAGAATATGTTTTTTCCTCTTCTGCTGCTTGGTTATGTGTCTTCTCTTGTTCTGA 699 0.4521 MTSDQYFRDAAREISTFEDIPSLEKWKSSTNAGVDSDRNATEGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKNMEQQKPQCPVCKSEVSQSSLVPLYGRNQVATPSGKNARQLGSSIPRRPPGRRPYNPAASVLQSTSETNQPRPFDSIQSSYTSTSGIFGEMIYARVFGNQLRNMYTYPNSYCLSGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01818 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Arst3g01818 232 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Arst3g01818 232 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Arst3g01818 232 MobiDBLite consensus disorder prediction 140 159 - -
Arst3g01818 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 125 IPR013083 -
Arst3g01818 232 Pfam RING-type zinc-finger 46 92 IPR027370 -
Arst3g01818 232 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 29 108 - -
Arst3g01818 232 SUPERFAMILY RING/U-box 37 101 - -
Arst3g01818 232 SMART ring_2 46 94 IPR001841 -
Arst3g01818 232 MobiDBLite consensus disorder prediction 114 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01818 Arst-Chr3 21273961 21276669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01818 44 232 C3H Transcription Factor Family AT4G28270 42.784 2.06e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01818 K10666 - gmx:100785491 265.003