Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01817 ATGATTTCTAGGTTCAAGCACCTGCAAGAGAAATCAGTACTAAAACAAACCAAAAATATGACCTCAGATCAGTACTTCAGGGATGCTGCTCGCGAAATCAGTACCTTCGAAGACATACCCTCCTTGGAAAAGTGGAAATCTTCCACCAATGCTGGTGTAGATTCCGATCGAAATGCCACCGAAGGATTCGACTGCAACATCTGCCTAGAATGTGTGCAAGAACCGGTAGTTACCCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAAACATGGAGCAGCAGAAGCCACAATGTCCTGTGTGCAAATCAGAAGTTTCTCAATCCTCCCTAGTTCCACTCTACGGCCGGAACCAAGTCGCAACGCCGTCCGGCAAAAATGCTCGCCAATTAGGCTCTTCGATACCTAGAAGACCCCCTGGCCGGAGACCATACAATCCTGCAGCATCTGTTTTACAATCTACTTCTGAAACTAATCAACCTCGGCCATTCGACTCGATTCAAAGCAGTTACACTTCAACATCTGGAATTTTTGGGAGTAGCAACCCAAGGATCAGAAGGCAATTGATGGAAGCTGATGAATCACTCAGTAGAATATGTTTTTTCCTCTTCTGCTGCTTGGTTATGTGTCTTCTCTTGTTCTGA 678 0.4558 MISRFKHLQEKSVLKQTKNMTSDQYFRDAAREISTFEDIPSLEKWKSSTNAGVDSDRNATEGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKNMEQQKPQCPVCKSEVSQSSLVPLYGRNQVATPSGKNARQLGSSIPRRPPGRRPYNPAASVLQSTSETNQPRPFDSIQSSYTSTSGIFGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01817 225 MobiDBLite consensus disorder prediction 159 183 - -
Arst3g01817 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 145 IPR013083 -
Arst3g01817 225 ProSiteProfiles Zinc finger RING-type profile. 65 114 IPR001841 -
Arst3g01817 225 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 48 127 - -
Arst3g01817 225 SMART ring_2 65 113 IPR001841 -
Arst3g01817 225 ProSitePatterns Zinc finger RING-type signature. 80 89 IPR017907 -
Arst3g01817 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 37 223 IPR045103 GO:0005783|GO:0006511|GO:0061630
Arst3g01817 225 MobiDBLite consensus disorder prediction 134 183 - -
Arst3g01817 225 Pfam Zinc finger, C3HC4 type (RING finger) 65 113 IPR018957 GO:0046872
Arst3g01817 225 SUPERFAMILY RING/U-box 56 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01817 Arst-Chr3 21273960 21276527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01817 63 225 C3H Transcription Factor Family AT4G28270 40.761 1.69e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01817 K10666 - gmx:100785491 208.764