Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01803 ATGGGTGTTCTTCACTTTACACTCCTCTGCTTCATTTTACTACATTCATGGAAGATTGCAGCTTATAATGATGAAGATTGGAAGAAAGCCACTGCAACATTCACCAAAGACACTGATGAAGGATCTCTCGTTACTGAAGGAGCTTGTGGCTATGGAGATATTCACAAGGCAAGTTATGGAAAACACAGTGCTGGATTGAGCAGCATTTTGTTCAACAGAGGGAGTGCTTGTGGGGCTTGCTATGAAATCAGGTGTGTTGACCACATCTTGTGGTGTGTTATGGGAAGCCCTTCTATTGTTGTCACTGCTACAGATTTCTGTGCTCCAAATTATGGCCTCTCAGTTGATTATGGTGGATGGTGCAACTTTCCAAGAGAGCATTTTGAGATGTCACATGCCGCATTTGCCCAAATTGCAAAGAGTAAAGCTGATATTGTTCCAGTTCAGTATAGAAGAGTGAAGTGTCAAAGAAGTGGTGGCCTGAAATACACAATGAGTGGAAATTCTCACTTCTATCAAGTTCTGGTAACCAATGTAGGACTTGATGGTGAGGTGGTTGCTATGAAAGTGAAGGGATCTAGAACAGGGTGGATCCCAATGGCAAGGAACTGGGGGCAAAACTGGCATTGCAATGTCAACCTTCAGCGACAACCTTTGTCATTCGAGGTAACTGTGAGCAGTGGAAAAACATTAACATCTTACAATGTTGCCCCGGCAAATTGGCAATTTTTGCAGACATTTGAAGGAAAACAGTTTTCAGAATGA 765 0.4261 MGVLHFTLLCFILLHSWKIAAYNDEDWKKATATFTKDTDEGSLVTEGACGYGDIHKASYGKHSAGLSSILFNRGSACGACYEIRCVDHILWCVMGSPSIVVTATDFCAPNYGLSVDYGGWCNFPREHFEMSHAAFAQIAKSKADIVPVQYRRVKCQRSGGLKYTMSGNSHFYQVLVTNVGLDGEVVAMKVKGSRTGWIPMARNWGQNWHCNVNLQRQPLSFEVTVSSGKTLTSYNVAPANWQFLQTFEGKQFSE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01803 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Arst3g01803 254 SMART dpbb_1 63 150 IPR007112 -
Arst3g01803 254 Gene3D - 13 156 IPR036908 -
Arst3g01803 254 PANTHER EXPANSIN-A15 10 252 IPR002963 GO:0009664
Arst3g01803 254 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Arst3g01803 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Arst3g01803 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Arst3g01803 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Arst3g01803 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Arst3g01803 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Arst3g01803 254 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Arst3g01803 254 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Arst3g01803 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Arst3g01803 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Arst3g01803 254 SUPERFAMILY Barwin-like endoglucanases 26 178 IPR036908 -
Arst3g01803 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Arst3g01803 254 Pfam Lytic transglycolase 64 150 IPR009009 -
Arst3g01803 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Arst3g01803 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Arst3g01803 254 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Arst3g01803 254 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Arst3g01803 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Arst3g01803 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Arst3g01803 254 Gene3D - 161 252 IPR036749 -
Arst3g01803 254 Pfam Expansin C-terminal domain 163 238 IPR007117 -
Arst3g01803 254 CDD DPBB_EXPA_N 26 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01803 Arst-Chr3 21102739 21104827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01803 9 252 Expansin Gene Family AT4G38210 62.041 1.17e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01803 - - ahf:112789777 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g01803 3 21102739 21104827 Arst3g01803 3 21102739 21104827 ECH