Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01547 ATGGAGGCTCTTGGTACCGTGGATGACCTCTTGGATTTCTCATCCGACGTAGGTGAGGATAATGATGTTGTTGTTGACAGATGCAGGAAAGGATTTCCTTGTAACCCAGAATGCAAACAACCTTCATTCACTCCGTTGGCCATGGATGATCCTAACTATTCATTCTCTGAGTTCGCCGAGGAAGAGCTTGAATGGTTGTCCAATAAAGACGCATTTCCTGCTGTCGAAACATTTGTCGACATACCATCTATTCGGCCTAACATGTCAAAGCACCAAGGGACAGCCTCGGTGCTTGAATATAGAAGGAGCATCCCCAATAATAACTGCACTAACAACATTACACTCTTAAACGGCTTTGATCACCTGAAGGTCCCTGTCCGAGCAAGGAGCAAGTACCGTAGTAGGCCTCGCCTGGCTATTGCTGACGTCTCAAGTCATCAGTCCTGGTGGAGACTATCTAGTAGAGAAATTTCCGGAGCAGAAGTGATAAAAATCCCAACCATTGGGAGGAAATGTCAGCACTGTGGATCTGAAGAAACTCCACAGTGGCGATCCGGTCCGCTTGGGCCAAAAACACTTTGTAATGCCTGTGGGGTTAGGTTCAAGTCTGGTCGGCTCGTCCCGGAGTACCGTCCTGCAACCAGCCCAACTTTTCGTCACGAGTTGCATTCTAATTCCCATAGGAAGATTATCGAGATGAGGAAGCAGAAGCAAATGGGAATGGTTTGA 729 0.4746 MEALGTVDDLLDFSSDVGEDNDVVVDRCRKGFPCNPECKQPSFTPLAMDDPNYSFSEFAEEELEWLSNKDAFPAVETFVDIPSIRPNMSKHQGTASVLEYRRSIPNNNCTNNITLLNGFDHLKVPVRARSKYRSRPRLAIADVSSHQSWWRLSSREISGAEVIKIPTIGRKCQHCGSEETPQWRSGPLGPKTLCNACGVRFKSGRLVPEYRPATSPTFRHELHSNSHRKIIEMRKQKQMGMV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01547 242 Pfam GATA zinc finger 172 205 IPR000679 GO:0006355|GO:0043565
Arst3g01547 242 ProSiteProfiles GATA-type zinc finger domain profile. 166 202 IPR000679 GO:0006355|GO:0043565
Arst3g01547 242 ProSitePatterns GATA-type zinc finger domain. 172 197 IPR000679 GO:0006355|GO:0043565
Arst3g01547 242 Gene3D - 167 239 IPR013088 GO:0006355|GO:0008270
Arst3g01547 242 FunFam GATA transcription factor 163 242 - -
Arst3g01547 242 CDD ZnF_GATA 171 219 IPR000679 GO:0006355|GO:0043565
Arst3g01547 242 SMART GATA_3 166 216 IPR000679 GO:0006355|GO:0043565
Arst3g01547 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 229 - -
Arst3g01547 242 PANTHER GATA TRANSCRIPTION FACTOR 55 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01547 Arst-Chr3 14756663 14759919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01547 7 239 C2C2-Gata Transcription Factor Family AT4G32890 38.550 2.93e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Arst3g01547 GATA 9.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01547 - - ahf:112727508 479.944