Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01539 ATGGACTCGGTTATCATGAAGGATCGGCATACCGGTAAACCCAGGGGTTTTGGTTTCATCACCTATGCAGATCCATCTGTTGTGGACCAGGTCATCCAGGAGAACCATGTTATCAATGGCAAACAGGTTGAGATCAAGAGGACTATTCCTAAGGGTTCATCACAAGCTAATGACTTCAAAACAAAGAAGATTTTTGTTGGTGGTATTTCAACATCGGTCACTGAAGATGAGTTTAAGAACTTCTTCTTGAAGTATGGGAAAGTTGTGGAACATGAGATCATACGTGATCACACTACTAAACGTTCCCGGGGTTTTGGCTTTATAGTTTTTGACAGTGAAAAAGTTGTTGACAATATGTTAGCAGATGGGAATATGATTGATATGTCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACTCAGCTTCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACTTCCTTACTATGATGGTTTTGGTGGATTTGGTGATTCTTTTGGAAGTTTTGGAAATAGCAGTTTTGATCCTGCTTCTTATAGATCCCTTGGAGGTTTTGGTGGTAGGCTTAGCAGTTATGGTGGATATGGCAGTGGAGATGATTTTGGTGGTAGTTTTGGAGGGTCTGGTGGTGGTATTGGTGGTGGCTATGCAGGCTATCGTGGAGAATCATCATTTGGTTTCTCTAGTCGCTATGGTTCCTTCATGGGGGGCCTTGGTGATGGTTATGGTGGGAGTGGTTTAGGTGCTTATGGACGAGGTGGTGGGTCCTATGGAAGCTATGGGGGTGCGGCTACTGGCGGAAGTTATGAACCAAGATCTGGTACTGGTTATGGTGGGGCTGGAGGACCTTATGGTAGTAGGGGAGGTTATGGTGGCAGTAGCCGCTACCATCCTTATGCAAGATAG 924 0.4481 MDSVIMKDRHTGKPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGISTSVTEDEFKNFFLKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNMLADGNMIDMSGTQVEIKKAEPKKSSNSASLPPFASDSRALPYYDGFGGFGDSFGSFGNSSFDPASYRSLGGFGGRLSSYGGYGSGDDFGGSFGGSGGGIGGGYAGYRGESSFGFSSRYGSFMGGLGDGYGGSGLGAYGRGGGSYGSYGGAATGGSYEPRSGTGYGGAGGPYGSRGGYGGSSRYHPYAR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01539 307 Gene3D - 53 158 IPR012677 -
Arst3g01539 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 50 IPR000504 GO:0003723
Arst3g01539 307 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 307 - -
Arst3g01539 307 SUPERFAMILY RNA-binding domain, RBD 3 54 IPR035979 GO:0003676
Arst3g01539 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 121 IPR000504 GO:0003723
Arst3g01539 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Arst3g01539 307 SUPERFAMILY RNA-binding domain, RBD 57 146 IPR035979 GO:0003676
Arst3g01539 307 FunFam Heterogeneous nuclear ribonucleoprotein 1 53 180 - -
Arst3g01539 307 SMART rrm1_1 63 136 IPR000504 GO:0003723
Arst3g01539 307 MobiDBLite consensus disorder prediction 277 307 - -
Arst3g01539 307 Gene3D - 1 52 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01539 Arst-Chr3 14545562 14548663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01539 11 112 Eukaryotic Initiation Factors Gene Family AT4G34110 31.481 8.62e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01539 K12741 - gmx:100801373 353.214