Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst3g01538 | ATGGGTTCCCGAAAGGGTGACAACCCTCACTTCGGTGACGGTGCCAGTCCTGGGAAAATCTTTATCGGAGGTCTAGCCAAAGACACCACTTTGGATACTTTTGTTAAGTACTTCGAGAAGTACGGAGAGATAATGGACTCGGTTATCATGAAGGATCGGCATACCGGTAAACCCAGGGGTTTTGGTTTCATCACCTATGCAGATCCATCTGTTGTGGACCAGGTCATCCAGGAGAACCATGTTATCAATGGCAAACAGGTTGAGATCAAGAGGACTATTCCTAAGGGTTCATCACAAGCTAATGACTTCAAAACAAAGAAGATTTTTGTTGGTGGTATTTCAACATCGGTCACTGAAGATGAGTTTAAGAACTTCTTCTTGAAGTATGGGAAAGTTGTGGAACATGAGATCATACGTGATCACACTACTAAACGTTCCCGGGGTTTTGGCTTTATAGTTTTTGACAGTGAAAAAGTTGTTGACAATATGTTAGCAGATGGGAATATGATTGATATGTCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACTCAGCTTCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACTTCCTTACTATGATGGTTTTGGTGGATTTGGTGATTCTTTTGGAAGTTTTGGAAATAGCAGTTTTGATCCTGCTTCTTATAGATCCCTTGGAGGTTTTGGTGGTAGGCTTAGCAGTTATGGTGGATATGGCAGTGGAGATGATTTTGGTGGTAGTTTTGGAGGGTCTGGTGGTGGTATTGGTGGTGGCTATGCAGGCTATCGTGGAGAATCATCATTTGGTTTCTCTAGTCGCTATGGTTCCTTCATGGGGGGCCTTGGTGATGGTTATGGTGGGAGTGGTTTAGGTGCTTATGGACGAGGTGGTGGGTCCTATGGAAGCTATGGGGGTGCGGCTACTGGCGGAAGTTATGAACCAAGATCTGGTACTGGTTATGGTGGGGCTGGAGGACCTTATGGTAGTAGGGGAGGTTATGGTGGCAGTAGCCGCTACCATCCTTATGCAAGATAG | 1056 | 0.4517 | MGSRKGDNPHFGDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEIMDSVIMKDRHTGKPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGISTSVTEDEFKNFFLKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNMLADGNMIDMSGTQVEIKKAEPKKSSNSASLPPFASDSRALPYYDGFGGFGDSFGSFGNSSFDPASYRSLGGFGGRLSSYGGYGSGDDFGGSFGGSGGGIGGGYAGYRGESSFGFSSRYGSFMGGLGDGYGGSGLGAYGRGGGSYGSYGGAATGGSYEPRSGTGYGGAGGPYGSRGGYGGSSRYHPYAR | 351 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst3g01538 | 351 | MobiDBLite | consensus disorder prediction | 321 | 351 | - | - | |
| Arst3g01538 | 351 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 184 | IPR000504 | GO:0003723 | |
| Arst3g01538 | 351 | SUPERFAMILY | RNA-binding domain, RBD | 16 | 98 | IPR035979 | GO:0003676 | |
| Arst3g01538 | 351 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 94 | IPR000504 | GO:0003723 | |
| Arst3g01538 | 351 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 17 | 98 | - | - | |
| Arst3g01538 | 351 | Gene3D | - | 97 | 202 | IPR012677 | - | |
| Arst3g01538 | 351 | SMART | rrm1_1 | 19 | 90 | IPR000504 | GO:0003723 | |
| Arst3g01538 | 351 | SMART | rrm1_1 | 107 | 180 | IPR000504 | GO:0003723 | |
| Arst3g01538 | 351 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 99 | 224 | - | - | |
| Arst3g01538 | 351 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 86 | IPR000504 | GO:0003723 | |
| Arst3g01538 | 351 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 165 | IPR000504 | GO:0003723 | |
| Arst3g01538 | 351 | Gene3D | - | 18 | 96 | IPR012677 | - | |
| Arst3g01538 | 351 | SUPERFAMILY | RNA-binding domain, RBD | 100 | 190 | IPR035979 | GO:0003676 | |
| Arst3g01538 | 351 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 6 | 351 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst3g01538 | Arst-Chr3 | 14545562 | 14548663 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst3g01538 | 4 | 170 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 24.737 | 5.41e-12 | 65.1 |