Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01448 ATGACTGATATAAGGAAGTGGTTCATGAAATCGCACGACAAGGGCAATGCCAATGCCTCCTCCAAGCCCGCCACCGATAAACCCCAGAATGACAAACCGGCGTCTGGAGGTCAAGAAAGTTCGGGGAGGAGGAAAACTAGCAAATATTTTTCTACAGACAAACAAAAGGCAAAAGATGAAAAAGAAACACTGGAGCTCCCTGCTAAACGAAAGAATATAAAGGACAGTGGAGAACTACCAGAGGCCCGTACTTCGAAGAAGATTCATGAAGCTGAAGAAGATGACGAAGATGACTATGCTTTGCCAAAAACTAAAAAAAGTTCAGCTCATGCCACTCCAACAAAGAAACTGAAGAGTGGATCTGGTAGGGGGATCCCGCAGAAATCTGTAGAGTTAGAAGAAAATGATGAAGATGACGAGAAAGAAGCTGTGGCATCAGTTAAATCTGCCGGAAGAGGTCGTGGTGGTAGAGGAGCATCGGCACAACCATCTGGTGGGAGGGGTAGAGGTGGTGGTGGTAGGGGTGGGTTCATGAATTTTGGAGAAAGAAAAGATCCTCCACATAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGCCTAACTTTTGTGATCAGCGGAACGCTGGATAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAGCGCCATGGTGGTCGTGTCACGGGATCAGTCAGCAAGAAAACGAATTATCTACTATGTGATGAAGATATTGGTGGACGAAAGTCTGAAAAAGCCAAAGAGCTTGGAACTAAATTTCTCACGGAGGATGGATTGTTTGATATGATTCGGGCATCAAAACCGGCAAAAGCTCCTTCACAAGAGCCCAAAAAGTCTGTCAATAATAAGCCTGCTACTAATGCATCACAGTCAAAAAGTCCCGCAAAAGCAGAACCTATTTTTAGCGGCACCTCTCTATCTTCACGGCTGCCTTCTACCCAAGCTAAGGCAAAGACAGCATCTACTGTTCACTCTCCTTTGATGTGGACAGAGAAATATCGACCTAAAGATCCAAAGGATGTGATAGGGAATCAGTCACTTGTTTCACAGCTCAGAAATTGGTTGAAAACTTGGAACGAGCAATTTCTTGGCACTGGCAGTAAAAAAAAGGGAAAAAAGCAGAACGAACCCAATTCCAAAAAAGCTGTGCTGTTAAGTGGAACCCCTGGTATAGGGAAAACTACTTCAGCAAAGCTTGTCTGTCAGGAGCTTGGTTTCCAGGCCATAGAGGTAAATGCTAGTGACAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGGATTAGTGGAAGCAATGCAAATTCAATCAAAGAACTTGTAACCAATGAGGCCCTTGGTGCAAATATGGATCGGTCAAAGCTTGCTAGAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCGAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGTCTTGTGAACTACTGTTTGCTTCTTAACTTCCGGAAACCTACAAAGCAACAGATGGCCAAGAGGTTGATGGATGTTGCAAAGGCAGAAAAGCTTCAAGTTAATGATATTGCTCTGGAGGAACTAGCAGTAAGAGTTAATGGAGATATGCGTATGGCACTGAATCAGTTACAATATATGAGTCTCTCTATGTCGTCTATAAATTACGACGATATCAGGCAGCGCTTTCTTACCAGCTCAAAGGATGAAGACATATCACCGTTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTACAAAGATGAGAATGGATGACAGGATTAGTCTTAGCATGAGTGATCCGGATCTTGTTCCACTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCTTTGCTGGTAAGGATGACCAGGGGGTAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCAATTGCTGATGGGGATCTAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTGGCCTCGTGTATTATTCCTGCTTCATTGTTGCATGGGCAGAGAGAAATACTTGAACAGGGAGAGCATAATTTTAACAGGTTCGGCGGGTGGCTTGGAAAGAACTCAACGACAGGCAAAAACCTTAGGCTTATGGAAGATCTGCATGTCCACATACTTGCTTCACGTGAATCTAGTTCAGGAAGGGATACTATCCGATTGGAATACTTTACCCTTCTCCTTAAACAATTAACAGAACCGCTACGATCTCTGCCCAAGGCTGAAGCTGTTGAGAAAGTCGTGGAATTTATGAATACATATTCTATCAGTCAGGAAGACTTCGATACTATTGTAGAGTTGTCAAAATTCAAGGGTCACCCTAATCCATTGGAAGGCGTACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCAAATCAAGGATGGTTCGAGCTGCGGATCTGGTGAATCTTCCTGGAATAAAGAAGGCCCCTAAGAAGCGCATTGCTGCTATTTTAGAACCAGCTGAAGAAGTAGCAGAGCAGGGCGAAGGTAACACGTTGGATGAGAGTGAAGAGGAGAACAATTCCGACACAGAGGAGTTGGAAGGCAACAATCCCGGCGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAACTCAAAGGGCATGCAAGTACAGTTAGAGCTGAAGGGTGCGGTGAATTCGAGTTCCAAGAAGGCATCTGGTGGCAAAGGTGGTGCACAGAAGGGTGGCCAAACTTCAAGGGCTGCTCCGAAAAGAAAGAGGTGA 2850 0.4411 MTDIRKWFMKSHDKGNANASSKPATDKPQNDKPASGGQESSGRRKTSKYFSTDKQKAKDEKETLELPAKRKNIKDSGELPEARTSKKIHEAEEDDEDDYALPKTKKSSAHATPTKKLKSGSGRGIPQKSVELEENDEDDEKEAVASVKSAGRGRGGRGASAQPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRASKPAKAPSQEPKKSVNNKPATNASQSKSPAKAEPIFSGTSLSSRLPSTQAKAKTASTVHSPLMWTEKYRPKDPKDVIGNQSLVSQLRNWLKTWNEQFLGTGSKKKGKKQNEPNSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNANSIKELVTNEALGANMDRSKLARTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMAKRLMDVAKAEKLQVNDIALEELAVRVNGDMRMALNQLQYMSLSMSSINYDDIRQRFLTSSKDEDISPFTAVDKLFGFNATKMRMDDRISLSMSDPDLVPLLIQENYINYRPSFAGKDDQGVKRMNLIARAAESIADGDLVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQREILEQGEHNFNRFGGWLGKNSTTGKNLRLMEDLHVHILASRESSSGRDTIRLEYFTLLLKQLTEPLRSLPKAEAVEKVVEFMNTYSISQEDFDTIVELSKFKGHPNPLEGVQPAVKSALTKAYKEQSKSRMVRAADLVNLPGIKKAPKKRIAAILEPAEEVAEQGEGNTLDESEEENNSDTEELEGNNPGEKLKSELQSLNSKGMQVQLELKGAVNSSSKKASGGKGGAQKGGQTSRAAPKRKR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01448 949 FunFam Replication factor C subunit 1 527 598 - -
Arst3g01448 949 Pfam Replication factor RFC1 C terminal domain 667 829 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Arst3g01448 949 MobiDBLite consensus disorder prediction 46 104 - -
Arst3g01448 949 Pfam ATPase family associated with various cellular activities (AAA) 394 493 IPR003959 GO:0005524|GO:0016887
Arst3g01448 949 MobiDBLite consensus disorder prediction 870 887 - -
Arst3g01448 949 ProSiteProfiles BRCT domain profile. 197 278 IPR001357 -
Arst3g01448 949 FunFam Replication factor C subunit 1 173 276 - -
Arst3g01448 949 Gene3D - 527 597 - -
Arst3g01448 949 CDD HLD_clamp_RFC 527 585 - -
Arst3g01448 949 FunFam Replication factor C subunit 1 338 526 - -
Arst3g01448 949 Pfam BRCA1 C Terminus (BRCT) domain 199 274 IPR001357 -
Arst3g01448 949 Gene3D - 599 708 - -
Arst3g01448 949 CDD AAA 389 490 - -
Arst3g01448 949 MobiDBLite consensus disorder prediction 286 333 - -
Arst3g01448 949 Gene3D - 338 526 IPR027417 -
Arst3g01448 949 MobiDBLite consensus disorder prediction 181 196 - -
Arst3g01448 949 Gene3D BRCT domain 174 276 IPR036420 -
Arst3g01448 949 MobiDBLite consensus disorder prediction 1 200 - -
Arst3g01448 949 MobiDBLite consensus disorder prediction 863 949 - -
Arst3g01448 949 MobiDBLite consensus disorder prediction 376 398 - -
Arst3g01448 949 SUPERFAMILY BRCT domain 197 278 IPR036420 -
Arst3g01448 949 SUPERFAMILY post-AAA+ oligomerization domain-like 598 743 IPR008921 GO:0003677|GO:0006260
Arst3g01448 949 CDD BRCT_RFC1 197 275 - -
Arst3g01448 949 FunFam Replication factor C subunit 1 599 708 - -
Arst3g01448 949 PIRSF RFC1 1 929 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Arst3g01448 949 MobiDBLite consensus disorder prediction 14 45 - -
Arst3g01448 949 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 16 924 - -
Arst3g01448 949 SMART BRCT_7 199 277 IPR001357 -
Arst3g01448 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 587 IPR027417 -
Arst3g01448 949 MobiDBLite consensus disorder prediction 278 333 - -
Arst3g01448 949 MobiDBLite consensus disorder prediction 897 929 - -
Arst3g01448 949 SMART AAA_5 390 528 IPR003593 GO:0016887
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01448 1 909 Core DNA Replication Machinery Family AT5G22010 68.547 0.0 1118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01448 K10754 - gmx:100790070 1396.72