Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01439 ATGGAAACCATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCTTAGTGACGGTTAGATGTGGACATTGTGCCAATTTGCTAACAGTTAACATGGGAGCATCACTTCAACCATTAATACCACCTCATCAAGAATATCATCATCAGTCACAGAAACAGCACCTAAGCTTTGAAGAATCAAGCAGCTGCAAAGAACTGGGATCATCATCTTCAAAATGTAACAAAATTGCGCCATTTGAGCCTGTAGAGAGTCATCAATCACCTAGGATTCCTCCCATTCGTCCTCCGGAGAAGAGACAACGTGTTCCATCTGCTTATAACCGATTCATTAAGGAGGAAATTCAAAGGATCAAGGCCAGTAATCCAGATATTAGCCACAGGGAAGCTTTCAGCACAGCTGCTAAAAACTGGGCACATTTCCCTCATATTCACTTTGGATTAAAGATGGATGGCAATAATGACAAGCAAGCAAAGTTGGACCATAATAACGGTGAAGGAACTCAAAAGTCTAATAATGGATTCTACTGA 582 0.4158 METMMATERVCYVHCNFCNTILAVSVPYSSLLTLVTVRCGHCANLLTVNMGASLQPLIPPHQEYHHQSQKQHLSFEESSSCKELGSSSSKCNKIAPFEPVESHQSPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKMDGNNDKQAKLDHNNGEGTQKSNNGFY 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01439 193 CDD HMG-box_SF 119 155 - -
Arst3g01439 193 FunFam Axial regulator YABBY 110 182 - -
Arst3g01439 193 MobiDBLite consensus disorder prediction 98 121 - -
Arst3g01439 193 SUPERFAMILY HMG-box 109 158 IPR036910 -
Arst3g01439 193 Pfam YABBY protein 6 165 IPR006780 GO:0007275
Arst3g01439 193 Gene3D High mobility group box domain 103 160 IPR036910 -
Arst3g01439 193 PANTHER PROTEIN YABBY 6-RELATED 5 177 IPR006780 GO:0007275
Arst3g01439 193 MobiDBLite consensus disorder prediction 167 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01439 Arst-Chr3 12902560 12912152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01439 1 193 C2C2-YABBY Transcription Factor Family AT1G08465 63.077 1.45e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Arst3g01439 YABBY 2.1e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01439 K25796 - gmx:100500026 278.1