Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01438 ATGGAAACCATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCTTAGTGACGGTTAGATGTGGACATTGTGCCAATTTGCTAACAGTTAACATGGGAGCATCACTTCAACCATTAATACCACCTCATCAAGAATATCATCATCAGAAACAGCACCTAAGCTTTGAAGAATCAAGCAGCTGCAAAGAACTGGGATCATCATCTTCAAAATGTAACAAAATTGCGCCATTTGAGCCTGTAGAGAGTCATCAATCACCTAGGATTCCTCCCATTCGTCCTCCGGAGAAGAGACAACGTGTTCCATCTGCTTATAACCGATTCATTAAGGAGGAAATTCAAAGGATCAAGGCCAGTAATCCAGATATTAGCCACAGGGAAGCTTTCAGCACAGCTGCTAAAAACTGGGCACATTTCCCTCATATTCACTTTGGATTAAAGATGGATGGCAATAATGACAAGCAAGCAAAGTTGGACCATAATAACGGTGAAGGAACTCAAAAGTCTAATAATGGATTCTACTGA 576 0.4149 METMMATERVCYVHCNFCNTILAVSVPYSSLLTLVTVRCGHCANLLTVNMGASLQPLIPPHQEYHHQKQHLSFEESSSCKELGSSSSKCNKIAPFEPVESHQSPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKMDGNNDKQAKLDHNNGEGTQKSNNGFY 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01438 191 CDD HMG-box_SF 117 153 - -
Arst3g01438 191 PANTHER PROTEIN YABBY 6-RELATED 5 175 IPR006780 GO:0007275
Arst3g01438 191 Pfam YABBY protein 6 163 IPR006780 GO:0007275
Arst3g01438 191 MobiDBLite consensus disorder prediction 97 118 - -
Arst3g01438 191 SUPERFAMILY HMG-box 107 156 IPR036910 -
Arst3g01438 191 FunFam Axial regulator YABBY 108 180 - -
Arst3g01438 191 Gene3D High mobility group box domain 101 158 IPR036910 -
Arst3g01438 191 MobiDBLite consensus disorder prediction 165 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01438 Arst-Chr3 12902560 12912152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01438 1 191 C2C2-YABBY Transcription Factor Family AT1G08465 63.212 2.07e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Arst3g01438 YABBY 4.1e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01438 K25796 - gmx:100500026 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02093 8 29579087 29586682 Arst3g01438 3 12902560 12912152 PCT