Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01413 ATGGACTATTCAGAAATCGAGGTTCCTGCACCATTTCTATGCCCAATATCACTTCACCTAATGAGAGAGCCTGTTACTGTTTCAACAGGAATCACATATGATAGAGAATCCATAGAGAGATGGTTATTCTCATGCAAGAATTTCACTTGCCCTGTTACAAAGCAACAAATTTTGCAAACACAAGATCTTACTCCAAACCACACTCTTCAAAGGTTGATCCAAAATTGGTGCACTCAGAATCATGTCTCACTTGATGAAACGACTCAGCATGATTCTAGTTCAACCATTGAAAAAGCTCAAGTTGTGAAACTCTTGAATGAAGCAAAGAGGTTTTCACATGATGAGAAATTGAAGTTTCTCAAATGGATTAAAACAATTGCTCTGGAGAGTGAAAGTAACAAGCAGTGTTTGGAATCTGCAGGGGCAATAGATTTCTTGGCTTCAACCATGGATGAAGCAGATTCAACTTTGTTCATCATTGAAGCAGGTATTGAACTCTTGTTTAAATTGAATCCTTCAATATATCAGCTAAAGTATCTTATAAACAATGAAAAAATTCACTTTTTTGAGTCATTGTTTCATGTATTGAGACTTGGAAACCAAGAATCTAGAACTTATGCAACATTGCTATTGAAATCATCATTTGGGGTGGCCAATCCAACCCAATTGAGTTGTGTCAAAACCGAATATTTTGTCGAAATATCAAGAGTGATAAGGGACAAGATCTCACAAGAAGCTTCCAAGGCCGCGCTGAAGCTTCTTGTGGATCTTTGTTCCCGGGGCAGGAACCAGGTCAGAGCAGTCGAGGCCGGCTTAGTACTAAACCTCATTGATCTCCTCATTGATAGTAACAATATTTCCGAAAGACGGATTTGTGAACTCATATTGATAGCTTTGGATAGGCTCTGCGGCTGCGCAGAAGGGCGCGCCGCCTTGTTGAGCCATGGTGCTGCTGTCGCCGTCATTTCGAAGAAGATTCTAAGGGTTTCTTGTGTTGCAAGTGATAGAGCTGTTAAGATTTTGGCCACAGTTTGTAGGTATTCAGCAACACTTAATTTGCTTCAAGAGATGTTGGTGGTTGGTGCTGTGTCTAAGTTGTGTTTGGTGCTTCAAGTGGATAATGGTGCTTCCAATAAGGCTAAGGAGAGGGCTAGTGAGATACTTAAGTTGCATACAAAGGTTTGGAAGAATTCCCCATGTATTCCTGTTAATTTGCTTTCAAACTATCCATGA 1233 0.4015 MDYSEIEVPAPFLCPISLHLMREPVTVSTGITYDRESIERWLFSCKNFTCPVTKQQILQTQDLTPNHTLQRLIQNWCTQNHVSLDETTQHDSSSTIEKAQVVKLLNEAKRFSHDEKLKFLKWIKTIALESESNKQCLESAGAIDFLASTMDEADSTLFIIEAGIELLFKLNPSIYQLKYLINNEKIHFFESLFHVLRLGNQESRTYATLLLKSSFGVANPTQLSCVKTEYFVEISRVIRDKISQEASKAALKLLVDLCSRGRNQVRAVEAGLVLNLIDLLIDSNNISERRICELILIALDRLCGCAEGRAALLSHGAAVAVISKKILRVSCVASDRAVKILATVCRYSATLNLLQEMLVVGAVSKLCLVLQVDNGASNKAKERASEILKLHTKVWKNSPCIPVNLLSNYP 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01413 410 SUPERFAMILY RING/U-box 4 83 - -
Arst3g01413 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Arst3g01413 410 SUPERFAMILY ARM repeat 104 389 IPR016024 -
Arst3g01413 410 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Arst3g01413 410 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Arst3g01413 410 PANTHER WDSAM1 PROTEIN 4 402 IPR045185 GO:0061630
Arst3g01413 410 CDD RING-Ubox_PUB 9 61 IPR045210 -
Arst3g01413 410 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Arst3g01413 410 Gene3D - 95 396 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01413 Arst-Chr3 12571774 12573207 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01413 1 410 U-box Gene Family AT2G35930 49.148 3.73e-127 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01413 - - gmx:100778012 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02075 8 29426726 29428110 Arst3g01413 3 12571774 12573207 PCT