Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01408 ATGGCAGAAACTGAGATTCCTGAATATTTTCTTTGCCCAATTTCCCTTGAGATGATGAAGGAGCCTGTGACTGCGGTAACAGGCATCACATACGAAAGAGAAAGCATTGAGCAATGGCTGCGGAAGGCGAAAGAGTGCGTTTGCCCCGTGACGAAGCAGCCATTGCCGCGAAGCTCACAATATTTGACCCCAAATCACACTTTAAGGAGACTGATTCAGGCATGGAGTGAAGCCACTAATAATGCAGCTAGAGGCCACGGTGCTGATCATCAACAGATTCCAAATCCGCAGTTGGAGAAGGTGCAAGTTGAGAAGCTAGTGAAGGATCTTAAGGTTCCTCATAGGAATCAAAGAGCGCTGAAGAAGTTGCATGGTTTTGCCATGGAAAGTGAGAGGACTAGAACTTGCATGGCTGAAGCTGGTGTTGCTAATGCCATGGTTATCTTCATTAACCAGCGTTTCCAACAAGGTAAGACAATGTGCCTAGAAGAAGCTCTAAGAATTCTTCATCTTACTTGGAATATACCATCAAGGACCAACATGAAGGCTCTTGTTGGAGAAAACTTGGACTTCATCAACTCTTTGACTTGGATTTTGCACCTTAACGTGCACAACAACAACGGTAAGATAGTAAACGAAGCAATGCCTTTATTGAAGTTGACAATTCAAAACACAAATTCAACCATCTTAGGGAACTTGAACTTCCAATTCTTCAAGGAAATGGTGAGAGTATTGGGAAAAAGAACAATATCTCAACAAGCCCTAAAATCCACCTTGCAAATCCTCATAGAAACATGCCCTTTGGGCAGGAATCGAAAGAGCATTGTCGAGTCGGGTGCAGTTTCAAACCTAATCGAACTTGAACTTGAAAAACCGGAGAAAAACATCTCCGAACATATATTCAACCTTCTAGCACATCTATGTTCATGTGCTGAAGGTAGAGAAATGTTTCTTAAACATGCCGCGGCAATAGCAATGGTTTCTAAGAGGATTCTTAGGGTTTCTTCCGCGACGGACGACCGGGCGATCCATATTTTATCGGTGATCGGAAAATATTCGGGATCAAGTGAGGTTGTTCTTGAGATGCTTAGGGTTGGTGCAGTGTCCAAGCTTTGCATGGTGATTCAAGCAGATTGTGCATCTTATTTGAAAGAGAAAGCAAGGGGTATACTTAGGTTGCATTCCAAAGTTTGGAGTGATTCACCTTGCATACAACTCTACTTATTAACTAGGTACCAAAGATAG 1245 0.4281 MAETEIPEYFLCPISLEMMKEPVTAVTGITYERESIEQWLRKAKECVCPVTKQPLPRSSQYLTPNHTLRRLIQAWSEATNNAARGHGADHQQIPNPQLEKVQVEKLVKDLKVPHRNQRALKKLHGFAMESERTRTCMAEAGVANAMVIFINQRFQQGKTMCLEEALRILHLTWNIPSRTNMKALVGENLDFINSLTWILHLNVHNNNGKIVNEAMPLLKLTIQNTNSTILGNLNFQFFKEMVRVLGKRTISQQALKSTLQILIETCPLGRNRKSIVESGAVSNLIELELEKPEKNISEHIFNLLAHLCSCAEGREMFLKHAAAIAMVSKRILRVSSATDDRAIHILSVIGKYSGSSEVVLEMLRVGAVSKLCMVIQADCASYLKEKARGILRLHSKVWSDSPCIQLYLLTRYQR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01408 414 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Arst3g01408 414 SUPERFAMILY RING/U-box 3 82 - -
Arst3g01408 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
Arst3g01408 414 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Arst3g01408 414 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Arst3g01408 414 PANTHER WDSAM1 PROTEIN 3 405 IPR045185 GO:0061630
Arst3g01408 414 CDD RING-Ubox_PUB 7 58 IPR045210 -
Arst3g01408 414 Gene3D - 92 401 IPR011989 -
Arst3g01408 414 SUPERFAMILY ARM repeat 219 381 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01408 Arst-Chr3 12449510 12451864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01408 3 412 U-box Gene Family AT2G35930 39.130 1.91e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01408 - - gmx:100811293 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02074 8 29421755 29423663 Arst3g01408 3 12449510 12451864 PCT