LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g01406	ATGGCAGCGTACTTTCATGGCGGCAACAATAACAACAACAGTGGCAGTTCGGATATTCATCATCATCAATCTTCCGCAGAAGGAGGGGGATTGCAGACACTGTTCCTCATGAATCCAAACAACTACGTACCTTTCTCCTCTGACACCGCACAAAATCCAACACCAAACATGCTCTTCCTCAATCCCAACAACAGTACTACTACTCCCCACGCGCTCAACCTCGCAAGTCTCTCTCACGCGCCGCCCCAACAACAAATTATCGGGGTTGCTTCAAATAATATCCTAGGACCTGCCGGCGGTGGCAATGAGATCTCCGGCTTCCATGGCTTTGTGGGGCCCACACCACGTGTTCATCACTACAATTGGAGATCCATCATGGATCAAACTGATCTTTCTTCTTCCTCTTCTTCTGTTGTTGCAGCAACCGTGACTGTTCTTCCGAATAATTATTCGGAACATACAGTGACAACTGCAACAACAGAAATGGAATTTCATAGAGCGAGAGTCCATCAATCCCATCATCATCCGCAAGGGTTGTCACTTAGTCTTTCCTCTCAACAACTTCCGTTTAGGTCTTTTTCCAACGCCGGTGGGGCTTTGAATAGTGTTGTACTTGGATCCAAGTTTCTGAAAGCGGCACAGGAGCTTCTTGATGAAGCCGTTAACGTGGGTAACGATAATAAGGTGGATTATTCCAACAATAAAGAGAAGATGAAAGGGAATAAAAATGTTGAATCCACGTCTGATGGTGGCGGTGATGATAATAGATCAAGTGGTGGCGGCAGCGGCGGTGAAAATAGTGGTGGTGACAACAAGCAAGGAAGTGAACTCAACACTGCTCAAAGACAAGAACTTCATATGAATAAGTCCAAGCTTGTTACCATGCTTGATGAGGTGGAGCAAAGATACCGAGAGTACAAACAACAAATGCAAATTGTGACGTCATCATTTGAGGAAGCAGCTGGTTATGGAGCTGCAAGAGCATACACAGCACTTGCATTGAAGACAATATCGAAGCAATTTCGGTGCCTAAAAGATGCAATTTGTTTGCAGATCAAAACGACGGGCAAGACGCTAGGTGAAGACAACTGCATGGGAGTTAAAATGGAGGGTTCAAGGCTTAGATTCATTGATCACAATCTCCGGCAACAAAGGGCGCTTCAACAGTTGGGAATGATACAACACAATGCTTGGAGACCACAAAGAGGATTGCCCGAACGAGCGGTTTCTATTCTTCGAGCTTGGCTTTTCGAACATTTTCTTCACCCTTATCCAAAGGACTCCGATAAGGTTATGCTTGCAAGACAAACTGGACTTACTCGGAGCCAGGTATCAAACTGGTTTATAAATGCCCGAGTTAGGCTATGGAAACCAATGGTTGAAGAAATGTACTTAGAAGAAATTAAGGATCAACAACACAACAACAATAATGGCTCCCAAGATGATGATGATGATGACATTGACACCACCACCAACAAGAAGAAGAAGAAGAAGCTAATAAGAGAATCATCAAACAAGGAATTATGGTCATCATCATCATCACAATTAGAACAACCACCATGTAGTAGTAGTGCCATTAGACTTGACCACTTAAACACCAACCAAAACAACACTACTCCAATGACTGAGATCTCACCAAATTCCAACAACAATAACAATTCAATCTCAACATCTCCATTGAATCTAAGGAATCCTCATCATGAGATTATGAACTCTCCAGGTAGCATCCTTTCTGTGGACATGGAAATGAAGCCGATAAGAGAGACAAATAGCAACAACAACAACAACGTCAATTTTGGAATTGAATTAGGGAACCCTAATAAAGACGGTTACCCTTTAATGGCTTCTTTTGGGAATGAAAACCACGACGGTGGCGGCGGTAGCGGTAGCGGTTATGGTTCTACTACATTCTCCATGGATGACATTGGAAGGTTCCATCAACAATTGGTGGCTCCAAGGTTCCATGGGAATGGTGTTTCACTCACTCTAGGGCTTCCACCAAGTGATAACAACAACACCAACAATAACTTTCCATCGCAACAAGTAGGGTTTCTCTCCTCACACAACATGCATTTGGGAGGAGGAAGGATTCATCATCATCATCACGAGATTGAAGCAGCAACCAATGATGACGAGTTTTGTGGAATGAAGAACAATGCCACAACACCTTCTTCTCATTCAGGAACAAGTTATGATCATAATAACAACAACATTGACATGCAAAATCCCAAGAGGTTTGCTTCTCATCAATTGTTGCGTGATTTTGTGGCCTAG	2274	0.434	MAAYFHGGNNNNNSGSSDIHHHQSSAEGGGLQTLFLMNPNNYVPFSSDTAQNPTPNMLFLNPNNSTTTPHALNLASLSHAPPQQQIIGVASNNILGPAGGGNEISGFHGFVGPTPRVHHYNWRSIMDQTDLSSSSSSVVAATVTVLPNNYSEHTVTTATTEMEFHRARVHQSHHHPQGLSLSLSSQQLPFRSFSNAGGALNSVVLGSKFLKAAQELLDEAVNVGNDNKVDYSNNKEKMKGNKNVESTSDGGGDDNRSSGGGSGGENSGGDNKQGSELNTAQRQELHMNKSKLVTMLDEVEQRYREYKQQMQIVTSSFEEAAGYGAARAYTALALKTISKQFRCLKDAICLQIKTTGKTLGEDNCMGVKMEGSRLRFIDHNLRQQRALQQLGMIQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQQHNNNNGSQDDDDDDIDTTTNKKKKKKLIRESSNKELWSSSSSQLEQPPCSSSAIRLDHLNTNQNNTTPMTEISPNSNNNNNSISTSPLNLRNPHHEIMNSPGSILSVDMEMKPIRETNSNNNNNVNFGIELGNPNKDGYPLMASFGNENHDGGGGSGSGYGSTTFSMDDIGRFHQQLVAPRFHGNGVSLTLGLPPSDNNNTNNNFPSQQVGFLSSHNMHLGGGRIHHHHHEIEAATNDDEFCGMKNNATTPSSHSGTSYDHNNNNIDMQNPKRFASHQLLRDFVA	757

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g01406	757	MobiDBLite	consensus disorder prediction	719	744	-	-
	Arst3g01406	757	Pfam	Associated with HOX	203	348	IPR006563	-
	Arst3g01406	757	MobiDBLite	consensus disorder prediction	225	275	-	-
	Arst3g01406	757	MobiDBLite	consensus disorder prediction	505	564	-	-
	Arst3g01406	757	FunFam	BEL1-like homeodomain protein 9	401	463	-	-
	Arst3g01406	757	Coils	Coil	289	316	-	-
	Arst3g01406	757	Gene3D	-	394	472	-	-
	Arst3g01406	757	CDD	homeodomain	398	459	IPR001356	GO:0003677
	Arst3g01406	757	MobiDBLite	consensus disorder prediction	244	275	-	-
	Arst3g01406	757	MobiDBLite	consensus disorder prediction	1	26	-	-
	Arst3g01406	757	Pfam	Homeobox KN domain	415	454	IPR008422	GO:0003677\|GO:0006355
	Arst3g01406	757	ProSiteProfiles	'Homeobox' domain profile.	395	458	IPR001356	GO:0003677
	Arst3g01406	757	MobiDBLite	consensus disorder prediction	719	745	-	-
	Arst3g01406	757	MobiDBLite	consensus disorder prediction	471	564	-	-
	Arst3g01406	757	SMART	HOX_1	398	462	IPR001356	GO:0003677
	Arst3g01406	757	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	93	482	-	-
	Arst3g01406	757	SMART	prehox3	198	350	IPR006563	-
	Arst3g01406	757	SUPERFAMILY	Homeodomain-like	399	465	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g01406	Arst-Chr3	12415550	12423430	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g01406	1	757	Homeobox Transcription Factor Family	AT2G35940	38.958	9.75e-118	368

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Arst3g01406		POX	1.6e-46	No_clan