Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01374 ATGACATCCAATAACCCTTACGAAATCATAGACGATGATGATGAGGGGTTTGATTGGGAAGCAGCTGCAAGAGAAATCGACGTCGTTTGCCAACAAAGCAAGTGTGTTAGCAGCAGTGGCTGTGATGCAAAGGGGAAGGCGAAGGCGAAGGGAAACAATGGCGAAACATCCCGGCAATCCACTCTCGATCAGTTTGTGGTCACTGCCAAGAAGGAAGCCCCGGTGCTTCAGGCCCAACACGAAGAAGAAGTCCCAACCTCTGCCTCCATCCACCACATTGATGCCGACGCAGCCAAAACTTGGATATACCCTGTTAATGTTCCTCTCCGTGACTATCAATTTGCCATCACGAAATCCGCACTTTTTTCAAACACATTGGTGGCATTGCCAACAGGATTAGGCAAGACACTCATCGCTGCTGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGAAAAATAGTCTTTGCTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAATATTGTTGGAATACCCCAGAAATGGACAATTGATATGACGGGTCAAATAAGTCCTCCCAAAAGAGCTTGTTTTTGGAAAACAAAGCGGGTTTTCTTTGTCACCCCACAAGTGTTGGAGAAAGATATTCATTCTGGTATATGCTTAGTAAAGTACTTGGTGTGTTTGGTTATTGATGAAGCTCACAGAGCTACAGGAAATTACTCTTATTGTGAAGCTGTTCGTGAGCTGATGGCTGTACCAGTGCAACTTAGAATATTAGCATTAACTGCAACCCCAGGATCAAAGAAGCAGACAGTCCAGCATGTTATTGATAATCTTCATGTCTCCAAGCTTGAATATCGCAGTGAGGTTAACCATGACGTTATCCCATATGTTCATAACAGGAAGATAGAGTTGGTAGAGGTTGCAATGGGCCAAGATGCTGCAGAAATAAATGATAAGCTTTTGGATGTCATACGTCCAATAGTAGCAAGGCTTAATGATATTGGGGTCATTCAGAATAGAAATTATCGTACTTTGAGCCCTTGTACGTTACTTGAAATAAGGGAAAAGTTCCGTCAAGGACATAGGCAAGACCTTTCTAATATCAACAATGTAGATGTCGAAGGGTATTTTGGGGTTCTTATCACTCTTTATTACATCCATAAGCTACTTTCAAGTCATGGAGTAAGGCCAGCACAAGAAATGCTTGAAAGAAAATTGAAGCAAGGATTTTTCGCAAAATATATGAGTAAAAATGAAGTTATGCTGAAAGCAAGGCAACTGATGCAGCAAAGCTTGTCTCATGGAGCATCTAGTCCTAAGCTCTCCAAAATGCTAGAAGTACTACATGATCATTTCGAAACCAATGATCCCAAAAGTTCAAGGGTAATTATCTTCTCCAATTATAGAGAAAGTGTCAGGGACATTATGGGTGCACTTGGAAACATTGGGGAACCAGTCAGAGCTACAGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCCGGTGCCTACAATGTTATTGTTGCTACATCAATCGGTGAAGAAGGTCTAGATATAATGGAAGTTGATCTTGTCATATCTTTTGATGCAAATATTTCACCACTTAGAATGATTCAGCGAATGGGAAGAACTGGAAGAAAGCATGATGGACGAGTTGTAATTTTAGCTTGTGAAGGGTCAGAGTTGAACGGCTACATGCGGAAGAAGGCAAAGAGCAAGAGTATAAGTAAACACATGCGAAATGGGGGTGTAGATAGCTTCAACTTTCATCCTAGTCCAAGAATGATTCCCCATGTCTTCAAACCTGAAGTTCAATATGTTGAGATGTCAATTGAGAAATTTATTCCCCGTGAAAAGAATGTGAAAGATGTCCCTCTTCCAATTTCTCCATCCAAAGATAAACTCACTGTTGCTGAAATGGATTTACTTAAAATGTATTTCCATTCTACTGAGGAAAATGCAAGTAGATTGTCTCTCATTGCCTTTCCTTACTTTCAAACCTTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCCTTAGAACAATGATGCTTATAGACGCAATGCAGCATTTGCAAGGATTAGAAACGTGTCCAGGAAATGACAAAACTACTCTTCAGGAAGGTTCGTGTTTAGGAAATAGCAAGCCGTTTTCCATTTCTGAGGCCAAACATGACACTGAATCATGCTATAGGCATACAATGGAAAGGAATGTTGACACCGTAAATTGTATGAACTTGGATTCCCATCCTTTGAGGATTAAAACCAAAGATACTATTGATCTAACTATACAAGAAGATAGTACTTTCGATGACTTGATTGAGCATGAAGAGGATTCACTCCAGGGTGATGAGATAGTTCCGGAGACTCCGGTTGCTAATAAAAGTGCATCAAATGGAGGAGATGATGCTGGTGAAACGACCAACCTTGTGGTCAAGACTTCATTGTTTCCAGAAGATGTATGCATTAATGGCATTAGAGAAGGAGAATTTAGTCCTCGCTTAACTGATTTCATTACAAGTGGTGTTGTTCCAGAGTCTCCAGTTGATGATGAACAAGAGAAATCAAGAGGCAAGTCTGTAATTCAAGACTGTATTTTGCCTGTTCGACTCCACGAAGAACAGGATACGAGTCCCTTGAGTTCTATGCGAAGTGAAAAAGTTGTAATTGAGGGCAGTACTGGCAAGAATGTCTCTAATTCTCCAGTAGATAATGGAACTCGAACTCCTTTACTTGAGCTGAAGAATTCTGCAATTAAAAGACGACGCATCATTATTTCCCAAACTGAGGAAGGTCACTCACACATGTCTGACCCAAGCTTCAGGGAAGAATCACATTTAAGCTCTGGTAAAATGCCTGGAACTGCAAGCATTCAACCTTTGCGCAAATTTAAAAGGTTGCGGAAAGCTGCAGATGGTGACAGCAAAGCTAATCAGGAAAACAATGATCCCATCCGATATAAGCATGTTCAAAGTCATTTTGGTAAAAGGAAATCAACGAATGATGTGAGAGACTTCATTGAGGAGGAAGCTGAGGTCTCTGCAGAGGCAAATGTATCTAGTGACGAAGATGGAGAAGATGATGTTTCTTATGACAGTTTCATTGATGACAGGACAAATCCTATAGGAGAAAGTCAGCCTGAAGTTAGTAGAGTGGACATGATGGCAATTTACAGGCGTTCTTTGCTTAGTCAAACGCAGATAAATGGAAGTTACAGCTCTTCTGCCATGTTCAGCCCTGACAGTGTGACTAATGGAAGTGGGAGCTCTTCAGGCAAGACAGTAATGAGTCATGTTCATGGCAACTGCATAGACCAAGAAAAAGTGCCATCAACTAGTTCCCTTACAGGAAACGTTACAAGTCGTAAAAGATTATCCCTTTATCATTCAGGAGGACACCTTCCAACTATGAACCTTGAACAAGAATTTGCACTTCAATCAAAGAAAGACTTGGTGGATGCCCCTGATTTTACTGTGGATTATCAATGTGATGATCAATTTTATAACGACCTTGATCTTGATGAGCTGGAGGCACAAGCAATCTCACTTCATAAAAAGAAATTAAGTTTGTCAACTCAGAAGCAAGATGCAATCCCTCTACCTCCCTCTCTGAAGGAAGATAGCTTTTGGGCTCCATCGTTTGACCTTGGCATATGA 3708 0.4105 MTSNNPYEIIDDDDEGFDWEAAAREIDVVCQQSKCVSSSGCDAKGKAKAKGNNGETSRQSTLDQFVVTAKKEAPVLQAQHEEEVPTSASIHHIDADAAKTWIYPVNVPLRDYQFAITKSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQKWTIDMTGQISPPKRACFWKTKRVFFVTPQVLEKDIHSGICLVKYLVCLVIDEAHRATGNYSYCEAVRELMAVPVQLRILALTATPGSKKQTVQHVIDNLHVSKLEYRSEVNHDVIPYVHNRKIELVEVAMGQDAAEINDKLLDVIRPIVARLNDIGVIQNRNYRTLSPCTLLEIREKFRQGHRQDLSNINNVDVEGYFGVLITLYYIHKLLSSHGVRPAQEMLERKLKQGFFAKYMSKNEVMLKARQLMQQSLSHGASSPKLSKMLEVLHDHFETNDPKSSRVIIFSNYRESVRDIMGALGNIGEPVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVILACEGSELNGYMRKKAKSKSISKHMRNGGVDSFNFHPSPRMIPHVFKPEVQYVEMSIEKFIPREKNVKDVPLPISPSKDKLTVAEMDLLKMYFHSTEENASRLSLIAFPYFQTFPSRVHKVKHSLRTMMLIDAMQHLQGLETCPGNDKTTLQEGSCLGNSKPFSISEAKHDTESCYRHTMERNVDTVNCMNLDSHPLRIKTKDTIDLTIQEDSTFDDLIEHEEDSLQGDEIVPETPVANKSASNGGDDAGETTNLVVKTSLFPEDVCINGIREGEFSPRLTDFITSGVVPESPVDDEQEKSRGKSVIQDCILPVRLHEEQDTSPLSSMRSEKVVIEGSTGKNVSNSPVDNGTRTPLLELKNSAIKRRRIIISQTEEGHSHMSDPSFREESHLSSGKMPGTASIQPLRKFKRLRKAADGDSKANQENNDPIRYKHVQSHFGKRKSTNDVRDFIEEEAEVSAEANVSSDEDGEDDVSYDSFIDDRTNPIGESQPEVSRVDMMAIYRRSLLSQTQINGSYSSSAMFSPDSVTNGSGSSSGKTVMSHVHGNCIDQEKVPSTSSLTGNVTSRKRLSLYHSGGHLPTMNLEQEFALQSKKDLVDAPDFTVDYQCDDQFYNDLDLDELEAQAISLHKKKLSLSTQKQDAIPLPPSLKEDSFWAPSFDLGI 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01374 1235 CDD SF2_C_FANCM_Hef 440 574 - -
Arst3g01374 1235 SMART ultradead3 105 305 IPR014001 -
Arst3g01374 1235 FunFam ATP-dependent RNA helicase, putative 430 600 - -
Arst3g01374 1235 Gene3D - 105 299 IPR027417 -
Arst3g01374 1235 Pfam Type III restriction enzyme, res subunit 122 266 IPR006935 GO:0003677|GO:0005524|GO:0016787
Arst3g01374 1235 Gene3D - 435 600 IPR027417 -
Arst3g01374 1235 MobiDBLite consensus disorder prediction 946 962 - -
Arst3g01374 1235 MobiDBLite consensus disorder prediction 982 1028 - -
Arst3g01374 1235 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 4 1213 - -
Arst3g01374 1235 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 4 1213 - -
Arst3g01374 1235 CDD FANCM_ID 316 423 IPR039686 GO:0006281|GO:0043138
Arst3g01374 1235 SMART helicmild6 476 566 IPR001650 -
Arst3g01374 1235 Pfam Helicase conserved C-terminal domain 448 565 IPR001650 -
Arst3g01374 1235 MobiDBLite consensus disorder prediction 1032 1048 - -
Arst3g01374 1235 FunFam Fanconi anemia, complementation group M 104 299 - -
Arst3g01374 1235 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 442 613 IPR001650 -
Arst3g01374 1235 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 284 IPR014001 -
Arst3g01374 1235 MobiDBLite consensus disorder prediction 37 57 - -
Arst3g01374 1235 MobiDBLite consensus disorder prediction 946 1062 - -
Arst3g01374 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 579 IPR027417 -
Arst3g01374 1235 CDD DEXDc_FANCM 107 288 IPR044749 GO:0005524
Arst3g01374 1235 Gene3D hef helicase domain 313 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01374 Arst-Chr3 11867725 11878056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01374 415 564 Eukaryotic Initiation Factors Gene Family AT3G13920 28.289 6.13e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01374 K10896 - gmx:100820078 1492.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g01374 3 11867725 11878056 Arst3g01374 3 11867725 11878056 ECH