Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01345 ATGACTCCAGTGAATTTGGCAGGGCAGTTCGGAGACACCACATACACCAAGGTTTTTGTTGGAGGCTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAATACTTTGAGCAATTCGGTGAGATCTTGGAAGCTGTTGTCATCACTGACAAAGCCACCGGAAGATCCAAAGGCTACGGTTTTGTCACGTTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATGCTGCTCCAGTAATTGATGGAAGAAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACACCAAAGCATGGTCCGGTAATGGGGTCTTTCCAGACCGGGTTTGGAGGGGGAGTGGGATCAGCTTTTCCATCGGCAGCAACCTTCCCTCATTATGCTATCCAGCAAGGGATACCATATAACGTTTATGGGTACTCTCCTTACTCACCGGATTACACTTACCCCACGAGCTACTACAGTGTGTATGGAGGTGCAGCAACAGCACAGTACCCAGTGTATGGAACGGGACATGCTGGAGGGATGATGACGGGTGCCGGGGCAGCAGCGGCGGCGGCAGCAGCCACCGCGTTTTATCCGTATATGCAGTACGGAGGAGAAGGGAGTGGCGGAGGTGGATCAAGCGGCGGGAGCTATACTACTTCAGGGCAGGGTTATGGTGTGAATTATCCGCCTCATCAACTGTTTCAGTATTCTCCGATTGCTTCAACCGGTGGCTATGCTCAGCACTATGCAACTCCCATGTCCCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACAATGGCTCTTCAAGCTCCAATTCCTCACCGCTAG 837 0.5197 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGPVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVYGGAATAQYPVYGTGHAGGMMTGAGAAAAAAAATAFYPYMQYGGEGSGGGGSSGGSYTTSGQGYGVNYPPHQLFQYSPIASTGGYAQHYATPMSLAPSPALQSGVTMALQAPIPHR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01345 278 Gene3D - 10 97 IPR012677 -
Arst3g01345 278 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Arst3g01345 278 SMART rrm1_1 17 89 IPR000504 GO:0003723
Arst3g01345 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Arst3g01345 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Arst3g01345 278 CDD RRM_RBM24_RBM38_like 16 91 - -
Arst3g01345 278 PANTHER BOULE-RELATED 6 256 - -
Arst3g01345 278 SUPERFAMILY RNA-binding domain, RBD 12 120 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01345 Arst-Chr3 11466785 11472408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01345 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 3.75e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01345 - - aip:107629746 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g01345 3 11466785 11472408 Arst3g01345 3 11466785 11472408 ECH