Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01339 ATGGTGGTCAACGAGAGGCCTACGAAGAGGATGAAGAGAAGAGTAACCGCCGATCTCCACGACTTTCTCACTTTCCCTTCCGCCGCCGGCGCTTCCTTCGACTCACCCTTTCGCAACTGTGTCCAGCGGTTCCTGGCAGACCATGGTCGCATAACGTTTCCTCCTTCACTCTTCCCGGCGCTGATGACGTGGCAGATCTTGTTCCGGGTTGGTGACCTTGTCGAAGGCCCTGATCTCTCGCCTGCGGTGGTCACGCTTGACATTGTGGAGGAAGATGTCACGCGCTCTCGAAGTTCAGTGTACTGTGACCAGTGTCGAGTCGTTGGGTGGAGCGGTCACCCGGTCTGTCGCAAGCGCTATCATTTCATTATCCGGGCTGCCAGTAAATCCATCGAGTCTTACCAAAGACCTTGTTCCAGATGTGAAAATCTTGTCCAACTATCTGAACCAAGGTGTAAATCATGTGACTTCAACATTACTGTGGATGATCTTGAAGATTGGGTGTATCAACAAATCGACGATAACACCCATCTCCTGCATGGTGTTGTCCACTCCAATGGTTATGGTCACCTGCTTACTCTCAATGGAAGAGAAGGTGGCTCAAAGCTTCTCTCTGGATTTGATATTATGGGGTTTTGGGATAGACTGTGTTCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGGTTGGAATATCGAGTGCTCCATGCAATCACCAATAGCCATTCGTGGTATGGCAATTGGGGTTATGAATTTGGAAATGGCAGCTATGCTCTTACACAAGATGCCTACCAGAAAGCAGTGAATACCCTGTCAGATATGCCCTTGTCCTCATTTTCATTCCAGGGTCGGGGACCACGAAGCCGCCTTCAGTGTGTTATTTCTCTTTACCAGTCGTTGGCTGAAACTGAACTTCTAACAATCAAAGACCTCTTCTCCTTTTTGTTGACATTGGTTCATGAATTTCGCAAGCCGATGACGAAAAAAATATCTAAACAGGATGAAGGCTCCAACAAATGTAATTTATTGTGTGCTTGGACAAGACATGATGTTGAGGATGTTCAACAGGCTTTGATTAAGGTTTTGCTTGCATCAGCTTCCTGTAGGGAGGTCAAATGGGTTGCTAGACGTGTTCTCAAGGGTGCAGTTTGCAGGGGTGTTTCATCTCCGGAGCTTCTAGACTACAGTCTTAAGCATTTGGAAGGAAAATTAGTTGCCAACGGAATGGTAGTTGCTACACGATGCAATCCAAATACTAGTGCTATAGAATTCAGGCTAGAACCGTTCTGTGATGGATTTACGCGAAATTCAAGCCATCCATCAGAAGAGCAAGTCATATCCGATCTGGCATTTTTATTTGATTCGATAATTCACCCAGACAAAATGGTGAGCTATAGACCCAAGGTTATGAGGAAAAGCGTGGCTGATTCAGCAAGGAAGCTTCTTGACTGTAAGCAGTTTGTGAAAGAGTACAAGCCAGAGGTGGCCATGGAACAACCTCCAGTCATCAGACTGTGGTGTCAGGTTGAACTTTCTGATCAGCCGAAAGATGATCCATCCCCGCCACCAGAACTAATCGTTTTGCCTTTGAGTGCTACTGTTGCCGACCTTAAGAGGGAGGTCACTAGTGCTTTTCAAGAGGTGTATGCAATGTTCAAGAGGTTTCAAGCTGAGGAAGTAATAGGGTATGGGTCAATTAGTGACTCGCTCACCTTAAAATTCTTGCTTGGAACAAGTGCGATGGTCAAAATTCAAGGCAAGTGTCCAGCCAAGTATGGTCTAAGCCGCTTCCGAATGGAACGGGGTACAGAGACATGGAGAGTTGACTGCCCCTGTGGGGCTAAGGACGATGATGGAGAAAGAATGTTAGCATGTGATACTTGCAGTGTTTGGCAGCATACGAGGTGCGCGGGAATTGATAATTGTGATGCAATACCTTCTAAGTTTGTGTGTCTTAGATGCCTTAGCTCGTACCGTCAGGAAGCTGTAAATTTGCCAGACTCCGATGTTGAAGCTAACAAGTCTTACAAATTATCGAATGCTTCTTGCAAAGATGAAGCAGTGGCAACGGACTGTGCAGCAGTTGCTTGTAACATAACTGTAGATTTTGGTGTACGATGA 2139 0.4619 MVVNERPTKRMKRRVTADLHDFLTFPSAAGASFDSPFRNCVQRFLADHGRITFPPSLFPALMTWQILFRVGDLVEGPDLSPAVVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASKSIESYQRPCSRCENLVQLSEPRCKSCDFNITVDDLEDWVYQQIDDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGFDIMGFWDRLCSAISVRKVSVMDLSKKFGLEYRVLHAITNSHSWYGNWGYEFGNGSYALTQDAYQKAVNTLSDMPLSSFSFQGRGPRSRLQCVISLYQSLAETELLTIKDLFSFLLTLVHEFRKPMTKKISKQDEGSNKCNLLCAWTRHDVEDVQQALIKVLLASASCREVKWVARRVLKGAVCRGVSSPELLDYSLKHLEGKLVANGMVVATRCNPNTSAIEFRLEPFCDGFTRNSSHPSEEQVISDLAFLFDSIIHPDKMVSYRPKVMRKSVADSARKLLDCKQFVKEYKPEVAMEQPPVIRLWCQVELSDQPKDDPSPPPELIVLPLSATVADLKREVTSAFQEVYAMFKRFQAEEVIGYGSISDSLTLKFLLGTSAMVKIQGKCPAKYGLSRFRMERGTETWRVDCPCGAKDDDGERMLACDTCSVWQHTRCAGIDNCDAIPSKFVCLRCLSSYRQEAVNLPDSDVEANKSYKLSNASCKDEAVATDCAAVACNITVDFGVR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01339 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 667 IPR013083 -
Arst3g01339 712 ProSitePatterns Zinc finger PHD-type signature. 616 660 IPR019786 -
Arst3g01339 712 SUPERFAMILY FYVE/PHD zinc finger 605 663 IPR011011 -
Arst3g01339 712 SMART PHD_3 615 661 IPR001965 -
Arst3g01339 712 Pfam PHD-finger 616 662 IPR019787 -
Arst3g01339 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 669 - -
Arst3g01339 712 CDD PHD_MMD1_like 615 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01339 Arst-Chr3 11331247 11334509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01339 80 660 PHD Transcription Factor Family AT5G22260 28.000 2.07e-84 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst3g01339 PHD 3.8e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01339 K26271 - gmx:100780558 1147.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g01339 3 11331247 11334509 Arst3g01339 3 11331247 11334509 ECH