Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01334 ATGGGTTCTTCTAATAACGGTGGTGTGCCACCGGGGTTTCGATTTCATCCAACTGATGAGGAATTGCTTCATTACTACTTGAAGAAGAAGGTGTCGTTTCAGAAGTTTGACATGGATGTTATTAGAGAGGTCGACCTCAACAAGATGGAGCCTTGGGACTTGCAAGAAAGATGCAGAATAGGGTCAACACCACAAAACGAGTGGTATTTCTTCAGCCACAAGGATAGAAAGTACCCAACAGGGTCAAGGACAAACCGAGCAACGAACGCAGGGTTCTGGAAAGCCACGGGAAGAGACAAGTGCATAAGGAACACCTACAAGAAGATTGGGATGAGAAAGACACTAGTGTTCTACAAAGGTAGAGCCCCTCATGGCCAGAAGACTGATTGGATCATGCACGAGTACCGTCTTGAAGATTCCAATGATCCTCAAGCAAATGCCAACGAAGATGGGTGGGTGGTGTGCAGGGTGTTCAAGAAGAAGAACCTATTCAAGATTGGAAATGAAGGAGGTGGTGGCTCCACACACACCTCATCGGACCAGCAACTCAACAACTCAACGGCCACCAATGCTCGTTCCTTCATGCAAAGGGAAAACCACTACCTACTGCATCACCACCAACAACAGCAAAACCCTAGGAATGGGAACCCATCGTCTTCATCCTCAGGCTTTGATGAGCTCGATAAACCCGAACTCGGTCTCCATCACTATCCTCACATGCAAAACCCACACTATTCACTCTTCCATCACTCCCAACCACTTCTTCATCCCCAGGCCCACAAGCCCATCGTCTATGACTACTCTTATACACCCGCGCTTCCCTCAGACCCTCCTGTCACCGCTAAGCAGCTCATGACTAACCCTAGAGACTGCGATAGCGGTGGCAGCGAGAGTCTGAGGTACCAGCAGGTTTCCGAGCCTGGTATGGAGGTTGGATCATGTGAACAAGCCCAGGAAATGGGCGCCGCCGCGGCCGCAAGAGGAGGAGGAGAAGGAATGAATGAATGGGGTGTGCTTGATAGGCTTGTAACCGGGAACCTTGGAAATGAAGATTCAGCCAACAAAGGGATTAGGTTTGAAGATGCAAATCCACACCAGATTAACCAGCTTTCTTTGAGGGGAGAGATGGATTTCTGGGGCTATGGAAAACAATAA 1155 0.49 MGSSNNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDSNDPQANANEDGWVVCRVFKKKNLFKIGNEGGGGSTHTSSDQQLNNSTATNARSFMQRENHYLLHHHQQQQNPRNGNPSSSSSGFDELDKPELGLHHYPHMQNPHYSLFHHSQPLLHPQAHKPIVYDYSYTPALPSDPPVTAKQLMTNPRDCDSGGSESLRYQQVSEPGMEVGSCEQAQEMGAAAAARGGGEGMNEWGVLDRLVTGNLGNEDSANKGIRFEDANPHQINQLSLRGEMDFWGYGKQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01334 384 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Arst3g01334 384 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Arst3g01334 384 SUPERFAMILY NAC domain 8 160 IPR036093 GO:0003677|GO:0006355
Arst3g01334 384 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 214 - -
Arst3g01334 384 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Arst3g01334 384 FunFam NAC domain-containing protein 18 164 - -
Arst3g01334 384 MobiDBLite consensus disorder prediction 204 238 - -
Arst3g01334 384 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01334 Arst-Chr3 11289868 11292098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01334 3 380 NAC Transcription Factor Family AT1G33280 51.421 2.91e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst3g01334 NAM 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01334 - - adu:107477630 759.599