Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01316 ATGGAGAATATGAATAGTTTTTGTCATGTTCCCCCGGGTTTTAGATTCCACCCCACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAGGTTAGTTCAAGGAAGATTGAGCTTGATGTAATCAAAGATGTTGACCTCTACAAAATTGAGCCATGGGACCTTCAAGAGATATGCAGGATAGGAAGAGAAGAGGAGAATGAATGGTACTTCTTTAGCCACAAGGATAAGAAGTATCCAACAGGAACAAGAACAAATAGGGCAACAGCAGCTGGGTTTTGGAAAGCAACGGGAAGAGACAAAGCTATATATTCAAAGCATGATCTCATAGGGATGAGGAAGACATTAGTCTTTTATAAAGGTAGAGCTCCTAATGGACAAAAATCCGATTGGATCATGCACGAATATCGCCTTGAAACTGATGAAAATGCCGCACCACAGGAAGAAGGATGGGTGGTGTGTAGAGTATTCAAGAAGAGAGTAACAACGATGCGTAAAGTGATGATGAGAGAGCATGATGAGTCTCCTAATTCTTCTTGTTGGTACGATGAGCAAGAATTGATGATGATGGAATCGCCAACAAAGCAACAATCCTCTATTCTTCTTCATCAATCCACCAATAATAACCATTCCAATTTGATGCAGCTACCACCATATCCTCTCATCAAGAAAGAGCTTCATCACCCATCATCATCATACCCCTTCCTTCAGCTTCCACTCTTAGAGTCTCATCAACAATCTGCTGCTGCACCTTCCTCCATTTCTGAACAACTCATCATGCCACCACCAATTGGAGGAGGAGGAGGAGAACAAGTCCCTAGTTTTCAGTCATTCTTCAATAATGAACAACAAGAAGTAGGAGTTCTTGATTGGAGAGTTCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGATGATAATCATGCATCCTCTAATAGTATTGTACAAGATCTCACACAGGAAATTGTTATGGTGCCTCACAATGATGCTGCATCAACATCAAACTCCCTCACCTGCCCAATTGATTTGTGGAAATAG 1038 0.4104 MENMNSFCHVPPGFRFHPTDEELVDYYLRKKVSSRKIELDVIKDVDLYKIEPWDLQEICRIGREEENEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENAAPQEEGWVVCRVFKKRVTTMRKVMMREHDESPNSSCWYDEQELMMMESPTKQQSSILLHQSTNNNHSNLMQLPPYPLIKKELHHPSSSYPFLQLPLLESHQQSAAAPSSISEQLIMPPPIGGGGGEQVPSFQSFFNNEQQEVGVLDWRVLDKFVASQLSQDDNHASSNSIVQDLTQEIVMVPHNDAASTSNSLTCPIDLWK 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01316 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 225 - -
Arst3g01316 345 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Arst3g01316 345 FunFam NAC domain-containing protein 19 163 - -
Arst3g01316 345 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Arst3g01316 345 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Arst3g01316 345 Pfam No apical meristem (NAM) protein 11 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01316 Arst-Chr3 11019535 11022897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01316 4 345 NAC Transcription Factor Family AT1G12260 56.319 1.74e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst3g01316 NAM 9.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01316 - - gmx:100815845 406.757