Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01180 ATGGAACAAGAATCAAACGTCAACAGACAATCCTTAACGGATCGGGTTGACAAAGCCTTGAATTTCTACGATGCGTTGTTTGATTGTTTGGTAACGGCGTCGTCAGTGAAGAAGATCTTCTTTGAGAGAGCGATGTTGGGAGAGCAAATAAAGAATATAATTGCGTGTGAGGGAGCTGAGAGAAAAGAAAGGTATGAGTTGCTTAAGGCGTGGATCTCAAGGCTTGAACTTGCTGGGTTTTGCGCTGAAGCTATTAGCTTGGAGGGGATGTTAAGAGGAGTAACTGAATTGCAGAATTTTGCACGTGGCTATAAGATTATTAGAGATGAAAAGTTTTTGGTTCTGTGTTGGAATAATAATCCACTCTTTTCTTTATCAGCCTGGAGATACTTGTGA 396 0.4091 MEQESNVNRQSLTDRVDKALNFYDALFDCLVTASSVKKIFFERAMLGEQIKNIIACEGAERKERYELLKAWISRLELAGFCAEAISLEGMLRGVTELQNFARGYKIIRDEKFLVLCWNNNPLFSLSAWRYL 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01180 131 Pfam GRAS domain family 1 129 IPR005202 -
Arst3g01180 131 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 124 IPR005202 -
Arst3g01180 131 ProSiteProfiles GRAS family profile. 1 129 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01180 Arst-Chr3 9164301 9164696 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01180 2 129 GRAS Transcription Factor Family AT1G50420 43.939 1.81e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Arst3g01180 GRAS 1e-32 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01180 - - adu:127745432 264.618